LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g2656	ATGAGTGCTCTGGGCCCCGAATATGTCTCTACAGACAAGGAAAGTATCATCAAAGAGCTGGTTGAGGGCAAGGACTGTGCTTCCCAGCTCAAGCTTTTGTTTCAAAACCCTTCTGGGCCTTACGCCACTACTCCCTCTGCACAACAACTTGCCGCCCAAATTTTGAGATCCTTCACCCAAAGTATTTCCGTCCTCACTTCCTCCGAAGCTGGCGGCGAGATTTTGGCGATTTCCTGCAATGACCGGAGGCCGGACGAATCCGGCCACAGCAGGAAGAGATCACCGCCGCCCGCAAAGGATCGGCGAGGCTGCTACAAAAGAAGGTATAAAATCCATTCCCTCGCGATCTACTCTTTGACTCTCATATCTCTTCACTTCCTGGACTTGTTTCGTGAGCGATCTCGCTTACTCATGATTTGGATTTTGGGGCACGTACGGACACGGACCAAATTGTTTTGGTCAAAGCTATCCATTATGTTGAAAGAGATTGAAGCTGTGAGGCTGGGTGAATTCCTGAAGGCAGCATATACACGGACCCAAATCTCTCAAACTATGGAAGATGAATACGCATGGAGAAAGTACGGACAGAAGGAGATCCTTAATTCTAAATTCCCCAGGAGTTACTTTAGGTGCACTCGGAAGCACGACCAAGGGTGTAAGGCAGTCAAACAGGTTCAGCGCTTAGAGGAGAATCCAGAAATGTTCCTGACGATGTACATTGGAGTTCACACGTGCAAGGACAACTTCAAGGCTCCCGAAATGATCAAAGATTCTGGTAATTGGGAATCATATCTGGCGCCGACTGAATCTAACAAGGCACCAGACGATGATCAAAAGGCCTCATCATCATCAACCCCAACCATAAAGCAGGAAAATCCCAAGGAGGACACACCACGGAGTGAAATAACAGATAACTTGGATCCTAACTTGTGGCCCGATTTGAAGGACTTGCTTTCGGAGCCCTTGAAGATATCGGATAACTTGAATTTTGGAGTGGATCAATCTGTTGGGTTTTGCGCTGATCATCATCTCCACTTCGAGTATTGA	1047	0.4756	MSALGPEYVSTDKESIIKELVEGKDCASQLKLLFQNPSGPYATTPSAQQLAAQILRSFTQSISVLTSSEAGGEILAISCNDRRPDESGHSRKRSPPPAKDRRGCYKRRYKIHSLAIYSLTLISLHFLDLFRERSRLLMIWILGHVRTRTKLFWSKLSIMLKEIEAVRLGEFLKAAYTRTQISQTMEDEYAWRKYGQKEILNSKFPRSYFRCTRKHDQGCKAVKQVQRLEENPEMFLTMYIGVHTCKDNFKAPEMIKDSGNWESYLAPTESNKAPDDDQKASSSSTPTIKQENPKEDTPRSEITDNLDPNLWPDLKDLLSEPLKISDNLNFGVDQSVGFCADHHLHFEY	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g2656	348	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	20	282	IPR044810	GO:0003700
	Acco10g2656	348	ProSiteProfiles	WRKY domain profile.	180	243	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g2656	348	MobiDBLite	consensus disorder prediction	265	308	-	-
	Acco10g2656	348	MobiDBLite	consensus disorder prediction	80	102	-	-
	Acco10g2656	348	SUPERFAMILY	WRKY DNA-binding domain	183	246	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g2656	348	Gene3D	WRKY domain	172	247	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g2656	348	SMART	WRKY_cls	185	247	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g2656	348	Pfam	WRKY DNA -binding domain	186	246	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g2656	348	MobiDBLite	consensus disorder prediction	277	291	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g2656	Acco-ChrAcco10	37199824	37201455	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g2656	173	314	WRKY Transcription Factor Family	AT3G56400	44.366	6.43e-30	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco10g2656		WRKY	2.4e-24	CL0274