Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2652 ATGTCACCCGTCTCTGTATATATGTTCTCTTCCTCAGCCTCACCTCCACGATCTCTTTCTTTAGTAATGCTGTTACTAGTGCTTCCTTCCGCTCCGACGACCCCCTCATCGTTGAATTTGATGATTCAAGGTTCTACGTTCATGGCGCCATCGATTATCATCGCCCCATTTGGGTTTGAGCGAGTAATATCAATTGCTCCCGCAGGAGGCTTCCGCTGGAGATTTCATTCTGGAGAAACTGTTCACCTTCAGGGGTCTTCGATGGAGAAGGAATTGGTCGAGTTATATGAAGCCGTAAAGAAGGCGGCTGATGTGGCGAGTTCAACTGATAGCGAAGTTGAAGAAAGCCGATGTGTTGATGCCTTCAAGCAGCTGAAGAAATTTCCCGTCAATTATCAAATTCTTGTGTCCACCCAGGTGGGCAAACACCTAAAAGTTCTAACAAAGCATCCAAGAAACAAAATCCGGGCTTTTGCTATTGACCTGATTGAGATATGGAAGGACATTATTATCAAGGAAACAAGCAAAAATAAGAATGGGAACTCACAGAATAATGTTCATTTGGCAAATGGGGAGAAAGCTAAAGTTGAAAAGGATCAGAAGACTCATTTGGTAAAGGTTGAGAAGGTTTCAAAACCTGACATTGTCAAGGTTGAGAAAACTGATAGGAATGGGACATCAAGCTCTGAATATGGAAAGGAACTCGTTTCTGCTGTCAGAAGTGAGAAAGCTATTTCTCCAGCTAATGTTAAGGTAGAAAAAATAGCCAGGGATGAGAAGCCAGCTTCTGGAGTGAAGAAGGCATCCTCAAGCCCTGCTGCCCCACCAAAGCTGAAAGCTATGATTAAATCTAATGATGCGATGCGAGACAAAATAAGGGAAATTCTCCGAGAGGCATTCTCTAAGGTTTCTGGAGAGGCTCATGAAACAATTGTGGATCAGGTTAATGCTTGTGACCCTATTCGGGTTGCTGTTACAGTGGAATCTGTACTATTTGAGAAGTGGGGTCCCTCTAATGGGGCTCAAAAGGTCAAGTACAGGTCCTTGATGTTTAACCTCAAGGATCCAAACAACCCAGATTTTCGGAGAAGAGTTCTGCTTGGAGAATGTGCGCCAGAGCAACTCATTAACATGAACACAGAAGACATGGCTAGCGATCAAAGGAAGCATGAGAATGAGAAACTCAAACAGAAAGCTTTATTTGAGTGTGAGCGTGGACAACAGGCAAAGGCCACGACTGATCAATTTAAGTGTGGTCGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGGAGTGCTGATGAACCTATGACAACTTATGTCACGTGCGTTTCTTGCAATAACCGGTGGAAATTCTGTTAG 1371 0.4376 MSPVSVYMFSSSASPPRSLSLVMLLLVLPSAPTTPSSLNLMIQGSTFMAPSIIIAPFGFERVISIAPAGGFRWRFHSGETVHLQGSSMEKELVELYEAVKKAADVASSTDSEVEESRCVDAFKQLKKFPVNYQILVSTQVGKHLKVLTKHPRNKIRAFAIDLIEIWKDIIIKETSKNKNGNSQNNVHLANGEKAKVEKDQKTHLVKVEKVSKPDIVKVEKTDRNGTSSSEYGKELVSAVRSEKAISPANVKVEKIARDEKPASGVKKASSSPAAPPKLKAMIKSNDAMRDKIREILREAFSKVSGEAHETIVDQVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRRVLLGECAPEQLINMNTEDMASDQRKHENEKLKQKALFECERGQQAKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVSCNNRWKFC 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2652 456 SMART mid_6 290 394 IPR003618 GO:0006351
Acco10g2652 456 Coils Coil 278 298 - -
Acco10g2652 456 Pfam Transcription factor S-II (TFIIS) 416 454 IPR001222 GO:0003676|GO:0006351|GO:0008270
Acco10g2652 456 SMART Cys4_2 416 455 IPR001222 GO:0003676|GO:0006351|GO:0008270
Acco10g2652 456 ProSitePatterns Zinc finger TFIIS-type signature. 418 453 IPR001222 GO:0003676|GO:0006351|GO:0008270
Acco10g2652 456 ProSiteProfiles TFIIS N-terminal domain profile. 97 173 IPR017923 -
Acco10g2652 456 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 100 456 - -
Acco10g2652 456 Pfam Transcription factor S-II (TFIIS), central domain 285 402 IPR003618 GO:0006351
Acco10g2652 456 Gene3D - 385 456 - -
Acco10g2652 456 Pfam TFIIS helical bundle-like domain 123 170 IPR017923 -
Acco10g2652 456 Gene3D - 267 384 IPR036575 GO:0006351
Acco10g2652 456 ProSiteProfiles TFIIS central domain profile. 288 411 IPR003618 GO:0006351
Acco10g2652 456 CDD Zn-ribbon_TFIIS 410 455 - -
Acco10g2652 456 SMART TFS2_5 95 172 IPR003617 GO:0005634
Acco10g2652 456 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 85 185 IPR035441 -
Acco10g2652 456 CDD TFIIS_I 96 170 - -
Acco10g2652 456 FunFam Probable Transcription elongation factor S-II 385 456 - -
Acco10g2652 456 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 81 186 IPR035441 -
Acco10g2652 456 SUPERFAMILY Elongation factor TFIIS domain 2 274 386 IPR036575 GO:0006351
Acco10g2652 456 NCBIfam transcription elongation factor S-II 101 456 IPR006289 GO:0003676|GO:0005634|GO:0006368
Acco10g2652 456 ProSiteProfiles Zinc finger TFIIS-type profile. 414 454 IPR001222 GO:0003676|GO:0006351|GO:0008270
Acco10g2652 456 SUPERFAMILY Zinc beta-ribbon 396 454 - -
Acco10g2652 456 PIRSF TFIIS 87 456 IPR035100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2652 Acco-ChrAcco10 37177777 37181889 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Acco10g2652 TFIIS_M 3.8e-32 No_clan