Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2638 ATGGAAACATCGGGTGCTAATTCAGAACATTACGCCATTTCTTCTTCCTCCCCATCTTCCGCAGTTGGTGCAAATAATAGTAACAGTAATAGCAGTGCCGTCCCAGAAACCTGGTACGGCATGAGTTTAACCCCTGTCAGCCCCTTCCGTTCTCCAGTTTGTTTTCTGTTAAATTATGCGGGCATTCTCCGCTCAAGTTCGTCAGCTCGCGATTCAGAGGCCGTGATAGTCAACAGCGGAGTTACATCTTCGGAAACACGCTCTCTGAATTCTGAGTCTGGCGCCGAGTGCAGCAGCAGTGCTGATGAAGTTTCGATACGGATCATTGGGGCTGCAGAACAAGAACAGAACGTTGCGTTAGGTTCTTTTTCTACTCCCTCTCTGAATCAGCTTGGACAAGTCGATCATGTTGATTTGGTGGAAAATAGAGGAGGAATGCTCCCATTGGATGACGATGCGGAGGGTCGCAGTGGTAGTGTCCCCCTAGTGTCTTCAACCACACCGGCCACTAGTGGACAGGCGGACGAAAATGTCGGGAATACCTCGGAAAGCAACAATGGGGATCCATCCTCTTACCATAGGTATGATATTCAGCAGGCTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATTGGTTGTTTTCATTCGTCAGCATTTGCAAGGCTTTTTTGTCACGATTTGGATTTCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAGGCAGACTGCGCTGAAGGGAGATAGGAAAGTTTCAGTTCTTGTTGGTATCTCTCTCGCCTTCATGCTTCATGTGATATGCATTTACTGTTGGTATCGAAGCGATGATCTTTTATACCCACTGATCATGGTTCCTCCAAAATCAGCACCTCCTTTCTGGCATGCTATATTCACCATCTTGGTTAATGATACACTGGTGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTTGCATATTACAAAAATGGAAGAGGTCATAGCTTCCGCCGGCAGGGCCAAATGTTAACTCTGGTTGAGTATTCATTGCTGTTGTATCGTGCCTTGTTGCCTACATCGATTTGGTACCGTTTTTTCTTAAACAAGGATTATGGGAGTCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACTTCTGTTATTGAGAAGGTTCAATGCTTCTTTTCTGCCTTTAAAGCGTTATCAAGAAAGGAAGTTCATTATGGAATTTATGCCACCATGGAACAGGTAAATGCTGCTGGCGATCTATGTGCTATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGCTGCAAACACATTTTCTGTGAGGAGTGCGTATCAGAATGGTTTGAGAGAGAACGGACTTGCCCTCTATGCAGAGCATTGGTAAAACCTGCTGAGCTGCGGACCTTCGGGGATGGATCGACAAGTCTAATTTTCCAGCTTTTTTAG 1461 0.4504 METSGANSEHYAISSSSPSSAVGANNSNSNSSAVPETWYGMSLTPVSPFRSPVCFLLNYAGILRSSSSARDSEAVIVNSGVTSSETRSLNSESGAECSSSADEVSIRIIGAAEQEQNVALGSFSTPSLNQLGQVDHVDLVENRGGMLPLDDDAEGRSGSVPLVSSTTPATSGQADENVGNTSESNNGDPSSYHRYDIQQAAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRKVSVLVGISLAFMLHVICIYCWYRSDDLLYPLIMVPPKSAPPFWHAIFTILVNDTLVRQVAMAFKCLLLAYYKNGRGHSFRRQGQMLTLVEYSLLLYRALLPTSIWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQCFFSAFKALSRKEVHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAELRTFGDGSTSLIFQLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2638 486 SMART ring_2 425 462 IPR001841 -
Acco10g2638 486 CDD RING-HC_RNFT1-like 423 463 - -
Acco10g2638 486 ProSiteProfiles Zinc finger RING-type profile. 425 463 IPR001841 -
Acco10g2638 486 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 26 486 IPR044235 GO:0061630|GO:1904294
Acco10g2638 486 MobiDBLite consensus disorder prediction 1 29 - -
Acco10g2638 486 MobiDBLite consensus disorder prediction 145 191 - -
Acco10g2638 486 Pfam Zinc finger, C3HC4 type (RING finger) 423 466 - -
Acco10g2638 486 SUPERFAMILY RING/U-box 415 468 - -
Acco10g2638 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 472 IPR013083 -
Acco10g2638 486 MobiDBLite consensus disorder prediction 159 191 - -
Acco10g2638 486 ProSitePatterns Zinc finger RING-type signature. 440 449 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2638 Acco-ChrAcco10 37083139 37088206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2638 50 486 C3H Transcription Factor Family AT5G01960 61.731 0.0 554