Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2585 ATGCGAATCCGATTCTGGAAATCAAGATTAACTCAGACAATTTTAAGGAGGCCAAAACGATCAGCTCTTTTCCGTTTGGTATTTATTATGGCGGTAGCTGAGAATGCCGGAGCCACAATCGGCTCATCCAGTGAAAATTTAGACAACGGTGTTGTATCATCGGACTCAACTGTGACCAATGAGCTGGAGAAATCAAAACCCAGAACTGGGGCTGTTGTAAATGGTTTAGAAACTGATGTTCAACCCGTCAACGGCGATCAGAGTCTGAATGATGTGTACGGCCATCAGGATAGAGCTCCCTCGGTCCCTAATGGCAATTACAAGTCTCAAATCATTCAGATGCGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAAGAGATGGCGCTAAATAATAGCGGATACGGAATTAAGCAAATGTCTAACGGTGTAATGAACGGTGAAGATGGTGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGTTGTTGTCGAAGTTGAATCCCATGGCCGAGGAATTTGTGCCACCATCACTTACCAATCATCACGGATTCTTCGGTGATGCTGGGTTTGGCTACCCTAACAACTTTATACCCCACATTAATTATGGCACTGCAAATGGACATACTAACAGAAGGAGGAAGAATGGATACAATCAAGGAAAGCGAAGAGCTAATAATAAAATGGACGTGGAGAAGAGAGAAGAGATGATTAAGAAGACTGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGACAGGTTGTTGATTGCCGTGTATGCGGGGATACTAATTCCATACTTCGTTTTGCCTTCGTCGAGTTTACGGATGAAGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGCACTATGCTTGGATATTACCCAGTGAGAGTGTTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCACATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACACAGGCAGATGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATCACCATCACTCAACTCGAATTGCATTTGTTGAGTTCTCTATGGCTGAAAGTGCAATTGCAGCACTGAACTGCAGTGGTGTGGTTTTGGGTTCGCTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTCCGGTCTCGCCTGCCACGTGGGTCAATGCAATGA 1281 0.4473 MRIRFWKSRLTQTILRRPKRSALFRLVFIMAVAENAGATIGSSSENLDNGVVSSDSTVTNELEKSKPRTGAVVNGLETDVQPVNGDQSLNDVYGHQDRAPSVPNGNYKSQIIQMRNGFEANGVQNQEMALNNSGYGIKQMSNGVMNGEDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNHHGFFGDAGFGYPNNFIPHINYGTANGHTNRRRKNGYNQGKRRANNKMDVEKREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDTNSILRFAFVEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDHHHSTRIAFVEFSMAESAIAALNCSGVVLGSLPIRVSPSKTPVRSRLPRGSMQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2585 426 SUPERFAMILY RNA-binding domain, RBD 218 317 IPR035979 GO:0003676
Acco10g2585 426 CDD RRM2_CID8_like 334 415 IPR034825 -
Acco10g2585 426 MobiDBLite consensus disorder prediction 205 231 - -
Acco10g2585 426 CDD RRM1_CID8_like 239 318 IPR034823 -
Acco10g2585 426 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 163 419 - -
Acco10g2585 426 Gene3D - 325 419 IPR012677 -
Acco10g2585 426 Gene3D - 204 318 IPR012677 -
Acco10g2585 426 FunFam Polyadenylate-binding protein-interacting protein 10 332 410 - -
Acco10g2585 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 316 IPR000504 GO:0003723
Acco10g2585 426 SUPERFAMILY RNA-binding domain, RBD 329 419 IPR035979 GO:0003676
Acco10g2585 426 MobiDBLite consensus disorder prediction 43 69 - -
Acco10g2585 426 MobiDBLite consensus disorder prediction 43 64 - -
Acco10g2585 426 SMART rrm1_1 242 312 IPR000504 GO:0003723
Acco10g2585 426 SMART rrm1_1 339 410 IPR000504 GO:0003723
Acco10g2585 426 Pfam Ataxin-2 C-terminal region 165 179 IPR009818 -
Acco10g2585 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 407 IPR000504 GO:0003723
Acco10g2585 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 305 IPR000504 GO:0003723
Acco10g2585 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 414 IPR000504 GO:0003723
Acco10g2585 426 FunFam Polyadenylate-binding protein-interacting protein 11 206 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2585 Acco-ChrAcco10 36801317 36805605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2585 243 402 Eukaryotic Initiation Factors Gene Family AT1G34140 26.829 2.42e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2585 10 36801317 36805605 Acco10g2585 10 36801317 36805605 ECH