LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g2575	ATGATGACGGGTGGTGAGTATAATATTGGAAGCTTCACCGGCTCAAAGCCACCTGATAATCCAAAAAAGAAGAACAACATGGAAAACAAGAGGAGGTTTAGTGATGAACAAATTCGATCACTTGAATGCATATTTGAATCAGAGTCAAAGCTTGAGCCAAGAAAGAAGATGCAGCTAGCAAGAGATCTTGGGTTGCAGCCGCGCCAAGTGGCCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACATATAGAGCAAGAGTACAGGAAACTCAGAGATGAGTATGATAATTTAGCATCTCTGTTTGAGTCCATAAAGGAAGAGAAGGAATTGTTGCAAGCTGAGGTACAAAAGCTAAGAGATTTAGTGGAGAGGTGTGATGATGGCAGTAAAAGGGAAAACAGGGTTGGGATGGAAAATAGCACAGAGGATGGTGCTTCAGGCAACGTACAAAACAACTGTAGCGCTGAAGTAAAGCCAAATTTCTCAAATGAAGGTTCAGAGAATGCCAAGAATGATGATATAAGAGAATTGGGATCAATTGAAAAGTGGTATAGTGTCGATCCAAGTGGTCTCTTGGATCAGTCTTATAGCAGTCCACAGTGGTTAGATTTCTGGAATTGA	630	0.4111	MMTGGEYNIGSFTGSKPPDNPKKKNNMENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKHIEQEYRKLRDEYDNLASLFESIKEEKELLQAEVQKLRDLVERCDDGSKRENRVGMENSTEDGASGNVQNNCSAEVKPNFSNEGSENAKNDDIRELGSIEKWYSVDPSGLLDQSYSSPQWLDFWN	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g2575	209	Pfam	Homeobox associated leucine zipper	84	125	IPR003106	GO:0006355\|GO:0043565
	Acco10g2575	209	MobiDBLite	consensus disorder prediction	1	20	-	-
	Acco10g2575	209	SUPERFAMILY	Homeodomain-like	10	84	IPR009057	-
	Acco10g2575	209	PRINTS	Lambda-repressor HTH signature	64	80	IPR000047	GO:0003677
	Acco10g2575	209	PRINTS	Lambda-repressor HTH signature	55	64	IPR000047	GO:0003677
	Acco10g2575	209	ProSiteProfiles	'Homeobox' domain profile.	24	84	IPR001356	GO:0003677
	Acco10g2575	209	MobiDBLite	consensus disorder prediction	132	175	-	-
	Acco10g2575	209	MobiDBLite	consensus disorder prediction	1	34	-	-
	Acco10g2575	209	Gene3D	-	12	86	-	-
	Acco10g2575	209	CDD	homeodomain	30	85	IPR001356	GO:0003677
	Acco10g2575	209	ProSitePatterns	'Homeobox' domain signature.	59	82	IPR017970	GO:0000981\|GO:0006355
	Acco10g2575	209	SMART	HOX_1	27	88	IPR001356	GO:0003677
	Acco10g2575	209	Pfam	Homeodomain	30	82	IPR001356	GO:0003677
	Acco10g2575	209	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	23	159	IPR045224	GO:0003700
	Acco10g2575	209	FunFam	Homeobox-leucine zipper protein ATHB-7	11	84	-	-
	Acco10g2575	209	MobiDBLite	consensus disorder prediction	142	170	-	-
	Acco10g2575	209	Coils	Coil	76	127	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g2575	Acco-ChrAcco10	36727430	36728146	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g2575	1	117	Homeobox Transcription Factor Family	AT2G46680	61.667	1.32e-42	142

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Acco10g2575		Homeodomain	1.9e-17	CL0123