Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2574 ATGCAGATCTTCGTCAAAACCTTGACAGGGAAGACTATCACCCTCGAGGTTGAGTCCAGCGATACCATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCTCCGGACCAACAGAGATTGATTTTTGCTGGGAAGCAACTGGAGGATGGCCGTACTCTTGCCGATTATAACATCCAGAAAGAGTCGACATTGCATCTTGTTTTGAGGCTTCGTGGTGGTATCATCGAGCCATCTTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATATGCCGCAAATGTTATGCTCGCTTGCACCCCCATGCTGTGAACTGCAGGAGGAAGAAGTGTGGACACAGCAACCAGCTGAGGCCGAAGAAGAAGATCAAAACAGATCAGGAAAAAGAAGACATAGTTGGATGGCACAGATGTGGAAAAGGAATGCGGACATGA 447 0.4653 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPHAVNCRRKKCGHSNQLRPKKKIKTDQEKEDIVGWHRCGKGMRT 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2574 148 PRINTS Ubiquitin signature 11 31 IPR019956 -
Acco10g2574 148 PRINTS Ubiquitin signature 32 52 IPR019956 -
Acco10g2574 148 PRINTS Ubiquitin signature 53 74 IPR019956 -
Acco10g2574 148 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Acco10g2574 148 SMART ubq_7 1 72 IPR000626 GO:0005515
Acco10g2574 148 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Acco10g2574 148 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Acco10g2574 148 PANTHER UBIQUITIN 1 94 - -
Acco10g2574 148 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Acco10g2574 148 FunFam ubiquitin-60S ribosomal protein L40 79 128 - -
Acco10g2574 148 CDD Ubl_ubiquitin 1 76 - -
Acco10g2574 148 Gene3D - 80 128 IPR038587 -
Acco10g2574 148 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Acco10g2574 148 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Acco10g2574 148 Gene3D - 1 79 - -
Acco10g2574 148 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Acco10g2574 148 SUPERFAMILY Zn-binding ribosomal proteins 76 129 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2574 Acco-ChrAcco10 36723961 36727166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2574 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.656 7.26e-91 258