Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2559 ATGTCGCTTCGACGAAGGACTCACGCTCTCAAACCGCCATCCAAGTCCACTTCAATCGGTAAATCGCTCGATTTCGATGACGTGTGCTGCAAAGAATGTGGATGTGGTCACTCGCCGGCCAAGTTGATTCTTTGCGACAAATGTGATCGAGGATACCACCTGTTCTGCCTCAGACCCATACTTGTTTCTGTGCCTAGCGGCTCTTGGTTCTGTCCCTCTTGCTCTAAAATCAAGAAGCCAAAGTCTTTTCCTCTAGTTCAGACAAAAATTATTGATTTCTTTCGTATTCAACGATCGCCGCAAGCTACTCAAACATCCAGTCAAGATACCCGAAAGAAACGAAAGCGAGCTACAAGCCTAGTGGTGTCGAAAAAGAAAAGAAAGCTGCTGCAATACTGCCCAAGTGAGGATCCTTCAAGGAGATTAGAACAGATGGCATCTCTAGCAACGGCATTGACGGCAACTAACACAGAATTCAGCGATGAGCTTACTTACATGCCTGGAATGGCACCGAGATCAGCTAATCGTGCGTCTCTTGAAAAGGGTGGGATGCAGGTTTTGTCCAAAGAAGATACAGACACCTTGAACATGTGCAAGAGTATGATGGAAAGAGGGGAATGTCCACCCCTCATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAGGCAGATAAATGGATAAGAGACTTAACAATAATCACAGAATATGTTGGAGATGTTGACTTCTTGAGGAAACGTGAAAATGACGACGGGGATAGCATGATGACACTTCTTTCCGCTTCTGATGCTTCAAAAAAGCTAGTAATCTGTCCGGACAAACGAAGCAACATCGCACGGTTTATCAACGGCATCAACAATCACACACCGGAAGGAAAGAAGAAGCAGAACTTAAAATGCGTGAGGTTCGACGTCAATGGGGAGTGTCGGGTTCTGCTGATTGCAAACAGAGACATATCAAAGGGGGAGAGATTGTATTATGATTACAACGGAAGCGAGCATGAGTATCCAACGGAACACTTCGTGTAA 1029 0.4529 MSLRRRTHALKPPSKSTSIGKSLDFDDVCCKECGCGHSPAKLILCDKCDRGYHLFCLRPILVSVPSGSWFCPSCSKIKKPKSFPLVQTKIIDFFRIQRSPQATQTSSQDTRKKRKRATSLVVSKKKRKLLQYCPSEDPSRRLEQMASLATALTATNTEFSDELTYMPGMAPRSANRASLEKGGMQVLSKEDTDTLNMCKSMMERGECPPLMVVFDPQEGFTVEADKWIRDLTIITEYVGDVDFLRKRENDDGDSMMTLLSASDASKKLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2559 342 Pfam SET domain 238 330 IPR001214 GO:0005515
Acco10g2559 342 SUPERFAMILY FYVE/PHD zinc finger 18 81 IPR011011 -
Acco10g2559 342 SUPERFAMILY SET domain 200 332 IPR046341 -
Acco10g2559 342 SMART PHD_3 32 75 IPR001965 -
Acco10g2559 342 CDD SET_ATXR5_6-like 205 342 - -
Acco10g2559 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Acco10g2559 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Acco10g2559 342 FunFam Histone-lysine N-methyltransferase ATXR5 114 342 - -
Acco10g2559 342 Pfam PHD-finger 30 75 IPR019787 -
Acco10g2559 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Acco10g2559 342 Gene3D SET domain 114 342 IPR046341 -
Acco10g2559 342 CDD PHD_RSF1 30 74 - -
Acco10g2559 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 91 IPR013083 -
Acco10g2559 342 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 102 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2559 Acco-ChrAcco10 36626464 36628563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2559 25 91 C2H2 Transcription Factor Family AT3G01460 38.806 2.68e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco10g2559 SET 0.0001 No_clan