Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2509 ATGGACGACAGCTTTTCTGATATTCTTGAAGACAAGGAATTTGGTGGGGACGACCTCTTTGCCATTTTGGAGAGCCTTGAGGACTTCTCTGACTTTCCTCCCGTTGATGAAGTTGTTGTTAGCACTAAGGAGAATGAGGAAACTTCAAGGTTCGTGTCACAAAAATCAACTTCCTCAAGTGCTCTGCAAGAGTCTGAAGCAACTGAGCGTGAAGCTTCACCCAAAAGCAAGAGACAAAAGCTCGCACCCACTACTTCGTCGGAGGATCCAATCCCAGATGGCCAACAAAGGATACCTCACATCACTGTTGAGCGCAACCGAAGGAAGCAAATGAACGAGCACTTGTCCGTTTTAAGGTCACTTATGCCAAACTTTTATGTCAAACGTGGGGACCAAGCATCGATAATCGGAGGAGTGGTTGATTACATAAACGAGTTGCAGCAGGTTCTACAGTCTCTGGAAGCCAAGAAGCAGAGAAAAGTATACAGTGAAGTGCTAAGCCCTAGGCTAGTGTCAAGTCCAAGGTCTTTAGCTCTGAGTCCTAGAAAACCACCAGTGAGTCCGAGGCTAAGCTTGCCCATTAGTCCCAGGACTCCACAACCAGGTAGTCCTTACAGGCCCAGGTTGCCGCAGCAAGGTTACCTTTCACCTACCATCTCCAACTCTCTCGAGCCATCTCCTACCTCTTCTGCTGCTTCTTCCTCCAATATTAACGATAACATCAATGAGCTTGTGGCCAATTCCAAGTCTGCTTTGGCACAAGTGGAGGTCAAGTTTTCTGGGCCACACGTTCTTTTGAAAACAGTGTCTCCACGTATTCCAGGCCAAGCTTTGAAGATCATATCAGCACTTGAAGACCTTGCTCTTGAAATCCTCCATGTCAGCATCAGCACTGCTGATGAAACCATGCTTAACTCATTCACTATTAAGTCTGATTTTCTGAATAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCTACAAATCCAGCAAACGTTCTGCTGATGAGTCTACTAATACGAGTTAG 1035 0.4618 MDDSFSDILEDKEFGGDDLFAILESLEDFSDFPPVDEVVVSTKENEETSRFVSQKSTSSSALQESEATEREASPKSKRQKLAPTTSSEDPIPDGQQRIPHITVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSEVLSPRLVSSPRSLALSPRKPPVSPRLSLPISPRTPQPGSPYRPRLPQQGYLSPTISNSLEPSPTSSAASSSNINDNINELVANSKSALAQVEVKFSGPHVLLKTVSPRIPGQALKIISALEDLALEILHVSISTADETMLNSFTIKSDFLNRLELNANSVPKNSLYKSSKRSADESTNTS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2509 344 FunFam Transcription factor SPEECHLESS 87 161 - -
Acco10g2509 344 MobiDBLite consensus disorder prediction 41 99 - -
Acco10g2509 344 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
Acco10g2509 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Acco10g2509 344 Gene3D - 91 160 IPR036638 GO:0046983
Acco10g2509 344 CDD bHLH_AtFAMA_like 100 169 - -
Acco10g2509 344 MobiDBLite consensus disorder prediction 78 92 - -
Acco10g2509 344 MobiDBLite consensus disorder prediction 186 206 - -
Acco10g2509 344 MobiDBLite consensus disorder prediction 51 67 - -
Acco10g2509 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 166 IPR036638 GO:0046983
Acco10g2509 344 Coils Coil 139 159 - -
Acco10g2509 344 MobiDBLite consensus disorder prediction 213 235 - -
Acco10g2509 344 SMART finulus 101 152 IPR011598 GO:0046983
Acco10g2509 344 MobiDBLite consensus disorder prediction 173 235 - -
Acco10g2509 344 PANTHER TRANSCRIPTION FACTOR FAMA 15 312 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2509 Acco-ChrAcco10 36344491 36346634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2509 1 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.966 2.13e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco10g2509 HLH 3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2509 10 36344491 36346634 Acco10g2509 10 36344491 36346634 ECH