Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2503 ATGGAGCAGAGCATCCTATGCAAATACACAGTGCATCACAGCGTTACCAAGAAGCTCGCAAGGCCCAAGGCCTCCCATATCAGCAATCCGACAGAGCCTCGAGTCGTACGGATATCCGTAACTGATCCGGACGCCACAGACTCCTCCAGCGACGAGGAAGGAGAGTTCCAGGCTCGACCCAGAGTGAAGCGGTATGTGAACCAGATAGAGATCGAGACTAGCGCGAAAAACGGGGCCCTCCCTAACAATGCCCGGAAGAGGCCCGCCAGAACCACCGCGACTTTCCGGCGGCCGGCAAAGGCTTCCGCGACGAATAACGCCAGGAAGTTCCGAGGTGTACGGCAAAGACCATGGGGGAAATGGGCGGCAGAGATTCGAGATCCAGCAAAACGAGTAAGGCTCTGGTTGGGGACCTATGATACAGCAGAGGAAGCGGCCATGGTGTACGATAATGCGGCGATTAAGCTGCGAGGTCCCGATGCTCTGACGAACTTTGCAACGCCACCGGCAAGGGAAAAGGTCGAAGAAGAAGAAGAAGTAGTAGAAGTAACCGAGAAGCCGGAAATGAAAGTTTCAGTACAGTCAGAAGTATCCGGTTCGGGCTATGATTCGGTAGAGGAGTCTCGTAATCTTTCGTCTCCGACGTCGGTGCTTCGGTTTACAAGTAATTCGAGCGAGGAAGCAGAGCCGGGCAAAGCCAAGGAAGCATGCGGAACAGGGGCGGAGAAGGAAGAAACTGGGGAAGAGCCATTTGGGGAGTGCGAAGGGGAAACAAGTCAGAGGAGATTGTGGGAGGAGGAGGAGTACTGGAGGATAGAGATGCCGGTGTTGGATGATGTGTTGATGAATTTTGAAACGCCAGAATACTTTCCGGTGATGTGGGAAGAACCGTCGACGTTGTACTGTGAAACGACGACGAGGGTGATAGCGGAGGAGATTGGAAGCGTGGGGGAGACGGATTTGGAGAGAATGTACTCGCCGTCTGCGATGTGCCAGGTGGACGATTACTTTCAAGACATACTATCAGGGTCCGATCCTCTGGTGACCCTCTGA 1053 0.5404 MEQSILCKYTVHHSVTKKLARPKASHISNPTEPRVVRISVTDPDATDSSSDEEGEFQARPRVKRYVNQIEIETSAKNGALPNNARKRPARTTATFRRPAKASATNNARKFRGVRQRPWGKWAAEIRDPAKRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFATPPAREKVEEEEEVVEVTEKPEMKVSVQSEVSGSGYDSVEESRNLSSPTSVLRFTSNSSEEAEPGKAKEACGTGAEKEETGEEPFGECEGETSQRRLWEEEEYWRIEMPVLDDVLMNFETPEYFPVMWEEPSTLYCETTTRVIAEEIGSVGETDLERMYSPSAMCQVDDYFQDILSGSDPLVTL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2503 350 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 248 - -
Acco10g2503 350 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Acco10g2503 350 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Acco10g2503 350 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Acco10g2503 350 MobiDBLite consensus disorder prediction 228 247 - -
Acco10g2503 350 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Acco10g2503 350 MobiDBLite consensus disorder prediction 193 227 - -
Acco10g2503 350 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Acco10g2503 350 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Acco10g2503 350 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Acco10g2503 350 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Acco10g2503 350 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Acco10g2503 350 MobiDBLite consensus disorder prediction 193 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2503 Acco-ChrAcco10 36290459 36291511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2503 7 227 AP2-EREBP Transcription Factor Family AT4G27950 49.782 6.53e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco10g2503 AP2 8.7e-14 CL0081