Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2500 ATGGGAAACAGACTGGAATTGTTGTTCTTGTTCTCAACAGCCTTCACCATCGGAGCAATGTTCTTTCGTGTTGGAGCCGAGCCGGTGGAAGATAAGCAAGCCTTGCTTGACTTCCTTCATAACGTAAACCAGTCTCTGGCTCTAAACTGGAATGGTGAGAAATCTTCTGTATGCAAAAGCTGGAGAGGAATCACCTGCAATAGAGATCATTCCAGAGTCATAGGCCTTCATTTACCTGCAGTGGGATTGAGAGGCCCAATACCACCAAACACCTTAAGTCGCCTCTCAGCACTTCAGACTGTGAATCTAACATCCAATAGCCTAACGGGTCCTTTTCCTTCTGGTTTCTCTGAGCTTAAGAATTTAACCTATCTTAACATTCAGTTCAACGAGTTTTCTGGCCCATTGCCATCAGATTTCTCAGTTTGGAAGAATTTGACTGTTGCTGATTTATCCAACAATTTTTTTAACGGGAGCATTCCTTCATCGATTTCGAGTCTGATTCATCTCACATCTTTTGTCCTGGAGAACAACTCGCTTTCCGGTGAAATTCCTGACATCAATATTCCTACCCTGCAAGAGCTGAATCTAGCCAACAATAACCTTAGTGGGATGGTGCCCAAATCCCTTCTGAGATTCCCAAGTTGGGCGTTTTCAGGGAACAATCTTTCATTCGCAAATGCTCAACCAAGAAAGAAAACCACAAAAAGACTTGGTAAGTCTGCATTAATAGGTGTCATTCTAGGTTGTAGTGGGCTTGCATTTGGAGTCATTGCAGCTTTCTTGCTTTTGTGCTACTACGACAAAGGAGGTGAAAATGGGCTAACAATGAAATCCCAGAAAAAAGGCATGTTTCTGAAAAAGGATATATCTGAGAGTCATTGCAGAAAAAACAAGATTGAGTTCTTTGAGGATTCCAATTTCGCCTTTGACCTGGAGGATCTGTTGAGAGCATCAGCTGAGGTGCTTGGTAAGGGGACGTATGGCACAACATATAAGGCAAATATAGAGGACGCTACCACTGTGGTGGTGAAGAGATTGAAAGAAGTCATCATCGGAAAACGTGAGTTTGAACAGCAGATGGAGGTTGTTGGGAGGATTAGGCACGACAATGTGGCAGCTCTCAGGGCATATTACTATTCCAAGGAGGAGAAACTTATGATCTATGATTACTATGAACAAAGGAGCGTTTCTGCTATGTTGCATGGCAGTAGAGGGGAAGAAAGGATTTCATTAAATTGGGATAGCAGGCTGAGGATTGCAATAGGTGCAGCAAGAGGCATTGCTGACGTGCATGCTCAACAAGGAGGAAAACTTGTCCATGGAAACATAAAAGCCTCCAACATCTTCCTTAACTCGGAAGGTTATGGCTGTGTATCTGACATTGGTTTAGCAACACTGATGAGTCCAATAGTGCCACCGTCACTAAGAACTGCTGGCTACCGTGCTCCAGAAGTAACAGATCCCAGAAAAGCAAGCCACGCATCTGATGTCTACAGCTTTGGGGTGTTCGTGTTGGAGCTTTTGACCGGAAAAGGCCCCATGCACGCCACCTCAAGTGAGGAGGCCGTCCATTTGGTTAGGTGGGTGAATTCTGTGGTCAGAGAGGAATGGACAGCTGAAGTATTTGATGCACAGTTGCTGAGATTCCCAAATATAGAGGAAGAAATGGTACAAATGTTACAACTTGCGATGGCATGTGTTGCTAGAGTTCCAGAGCAGAGACCAAAGATGCAAGATGTTTTAAGAATGATGGAGGATATTCTTCGACCAAATACTGAGAATCGACTGTCATCTGAATCCAGATCAGCAGCTTCTACCCCGACACCACCGGTAATTGACGTACCTTCTTCCTCTGTGGATGCTTAG 1869 0.443 MGNRLELLFLFSTAFTIGAMFFRVGAEPVEDKQALLDFLHNVNQSLALNWNGEKSSVCKSWRGITCNRDHSRVIGLHLPAVGLRGPIPPNTLSRLSALQTVNLTSNSLTGPFPSGFSELKNLTYLNIQFNEFSGPLPSDFSVWKNLTVADLSNNFFNGSIPSSISSLIHLTSFVLENNSLSGEIPDINIPTLQELNLANNNLSGMVPKSLLRFPSWAFSGNNLSFANAQPRKKTTKRLGKSALIGVILGCSGLAFGVIAAFLLLCYYDKGGENGLTMKSQKKGMFLKKDISESHCRKNKIEFFEDSNFAFDLEDLLRASAEVLGKGTYGTTYKANIEDATTVVVKRLKEVIIGKREFEQQMEVVGRIRHDNVAALRAYYYSKEEKLMIYDYYEQRSVSAMLHGSRGEERISLNWDSRLRIAIGAARGIADVHAQQGGKLVHGNIKASNIFLNSEGYGCVSDIGLATLMSPIVPPSLRTAGYRAPEVTDPRKASHASDVYSFGVFVLELLTGKGPMHATSSEEAVHLVRWVNSVVREEWTAEVFDAQLLRFPNIEEEMVQMLQLAMACVARVPEQRPKMQDVLRMMEDILRPNTENRLSSESRSAASTPTPPVIDVPSSSVDA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2500 622 SUPERFAMILY L domain-like 42 215 - -
Acco10g2500 622 Pfam Leucine rich repeat 87 131 IPR001611 GO:0005515
Acco10g2500 622 ProSiteProfiles Protein kinase domain profile. 317 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g2500 622 MobiDBLite consensus disorder prediction 592 622 - -
Acco10g2500 622 FunFam Probable inactive receptor kinase RLK902 28 188 - -
Acco10g2500 622 ProSiteProfiles Leucine-rich repeat profile. 191 212 IPR001611 GO:0005515
Acco10g2500 622 Gene3D Transferase(Phosphotransferase) domain 1 393 607 - -
Acco10g2500 622 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 392 599 - -
Acco10g2500 622 Pfam Protein kinase domain 320 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g2500 622 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Acco10g2500 622 Pfam Leucine Rich Repeat 192 219 IPR001611 GO:0005515
Acco10g2500 622 Gene3D Ribonuclease Inhibitor 29 234 IPR032675 -
Acco10g2500 622 FunFam pollen receptor-like kinase 1 287 391 - -
Acco10g2500 622 SUPERFAMILY Protein kinase-like (PK-like) 321 600 IPR011009 -
Acco10g2500 622 Gene3D Phosphorylase Kinase; domain 1 283 391 - -
Acco10g2500 622 PANTHER OS05G0588300 PROTEIN 14 600 - -
Acco10g2500 622 ProSitePatterns Protein kinases ATP-binding region signature. 323 354 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2500 Acco-ChrAcco10 36270171 36272646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2500 20 613 Receptor kinase-like Gene Family AT4G23740 53.355 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Acco10g2500 Pkinase 8.1e-31 CL0016