Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2472 ATGGAGGATTCTTCTTCATCTGCTGTTGAGGACACCAAGACTTGCCCTCGCGGTCACTGGAGACCCTCCGAGGACGAGAAACTCCGCCAACTGGTCCAACAATATGGTGCCCAGAACTGGAATTCTATCGCCGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTAGATCCTAGGATTAACAGGAGGCCATTTACAGAAGAGGAAGAAGAGAGGCTACTAGCAGCTCATCGCATCCATGGGACTAAGTGGGCGCTCATAGCAAGGCTTTTCCCAGGTCGTACTGATAACGCTGTGAAGAATCATTGGCATGTTATAATGGCGCGCAAGCAAAGAGAACAATCTAAGTTATGCGGCAAGAGAAGCTTTCAAGATATTTATAACTATAATGATTCTAATTATAGTATTAGTTCCTCCAAGAACATTACATCAAATTCTTATCTTAGCTCCAGAATGAGTGGGTTAGAGAATGCCAGATTCTTTGATTTCCGTAACCTTGATCATCATAAAGATCGAATATTATTTGCCGATTCTCCCTCCACTTCTTTGGCTTCCTGGAGTTTTGCAACCTCCTCATCAAACGGTTCTCCTGTGGCAGATTCATTTAGAAGAGAAGGCAGAGATTTCTTCAATTCTCACTCAAATCTTTACATATCGGAAGGAGCCAAAGGTTCAGATAGGTTTCACTACAGAATTTATCCGAATTCTTCAGCAAGTTACAGGAGAGTCGTCCCATCAGTAAGTGCTTTTGGATTTTTTGGTTCCGGTGATGATGGAAAGACAAAAAGGGACTTCACCAATTTCTATGATAGCTCGGCACTCACCAGGTTACGGGCTTCTACGGATCAGCAAGGGCAAGAAGATGACAAGCCAGTCGAACACAAAGAAGTTCCTTTTATTGATTTTCTTGGTGTGGGTGTTTCTTCATCGTAA 954 0.4329 MEDSSSSAVEDTKTCPRGHWRPSEDEKLRQLVQQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGTKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDIYNYNDSNYSISSSKNITSNSYLSSRMSGLENARFFDFRNLDHHKDRILFADSPSTSLASWSFATSSSNGSPVADSFRREGRDFFNSHSNLYISEGAKGSDRFHYRIYPNSSASYRRVVPSVSAFGFFGSGDDGKTKRDFTNFYDSSALTRLRASTDQQGQEDDKPVEHKEVPFIDFLGVGVSSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2472 317 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Acco10g2472 317 SMART sant 68 116 IPR001005 -
Acco10g2472 317 SMART sant 16 65 IPR001005 -
Acco10g2472 317 Gene3D - 71 131 - -
Acco10g2472 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Acco10g2472 317 CDD SANT 80 111 IPR001005 -
Acco10g2472 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 63 IPR017930 -
Acco10g2472 317 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
Acco10g2472 317 CDD SANT 20 61 IPR001005 -
Acco10g2472 317 PANTHER MYB PROTEIN-RELATED 17 154 - -
Acco10g2472 317 FunFam MYB transcription factor 17 68 - -
Acco10g2472 317 Pfam Myb-like DNA-binding domain 20 80 - -
Acco10g2472 317 Gene3D - 17 68 - -
Acco10g2472 317 MobiDBLite consensus disorder prediction 1 23 - -
Acco10g2472 317 SUPERFAMILY Homeodomain-like 16 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2472 Acco-ChrAcco10 36089025 36090382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2472 15 124 MYB Transcription Factor Family AT1G17950 81.818 4.27e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco10g2472 Myb_DNA-bind_6 7.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2472 10 36089025 36090382 Acco05g2789 05 43031380 43034919 CCT
Acco10g2472 10 36089025 36090382 Acco10g2472 10 36089025 36090382 ECH