Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2452 ATGGAGACGATGCGACTTACGAAGCTTTGGTTATGGATTCCATTATTATTAGTAGCCGCTGCAGAAGCTCAATCCCTTGAAGGCTGCCTCAATAAATGTGGAGATGTGGAGATTCCATATCCTTTGGGTATTGGTGTGCAACCTCGTACTGGTCGCAACTGCTTCTTGCAAGAATCTTTTGAGCTCACTTGCAATACTTCCACCTCCACGTTGTTTTACGGAGACCACCCTGTTTCTAACATATCAGTCCAAGGTGGTAATCTTGACATTTCCATGTCCGTCTCCAAGGTTTGTTACAATCAACGTGGTGGCGCTATACCTAACGCTCACTCTCTTGTAAACAATCCTTCTTTCACCGTTTCCAGCACCCAAAACAAGTTCATAAGCGTTGGTTGCGACACTTTAGGCTTAATTAAATTCCAAAACAACCGTACTTCTTATGGTGGCTGCGTGACGCTGTGTAGCGCACCTCCTCAACAAGACTTGAATGACAAAACTTGTTCGGGAACTGGGTGTTGCCAGGTGGATATTCCTGTCGGAATGAGGAATATCTCTGTTATAGCATCTTCCGTCTTCAACCACACGAACGTGTCGGATTTCAACAACTGTAGGTACGGTTTTGTTACCAAACAGAGTTGGTTTAATTTCTCCGTTGATTATCTACGTGACTTCCCCTTTGATTTGGTCCCGCTTGTCCTAGATTGGACTGTTTCAAATCAAACCTGTCATGCTGCTTCGACCAGGTCGGATTATGCCTGCACCGCTAATACTGATTGTGCCGACTCCGATGATGGATTCGGGTACAACTGCAAATGCAAACCCGGTTTTGATGGAAACCCGTACCATCCAGATGGATGTCACGATGTAGACGAATGCCAGGAATCGACCAACAATTGCATAAGTAAAGAAAATTGCCGTAACACGATTAGATCTTTTGAGTGTTATTGCCCACCTGGCTACTCTGGGAATGGAACCACCGCCGGAGGATGCTACCCACCTTTGTCCAAAACTCCACTTACTATGGTCTTCACTGGTGTAAGTATAGGCTTGGCGGCTTTTTTTATGAGTATGTCTTGGTTGTACTTGGTCTCCCAGAAGAGGAAGCACATGAAGCAAAAGGAAAAGTTTTTTCGTCAGAACGGCGGTTCAATCTTGCAGCAGCAACTCTCCGGGAGACATGACACATCCCTTGCGGTTAAAATCTTTACTGCTGAGGAATTGAAAAGGGCCACCAACAACTATCATGACAACTTGATCATCGGCAGAGGAGGTTTTGAATACATGCAAACAAATCAGCTGACAGAGAAGAGTGATGTGTATAGTTTTGGGGTGGTGGTTATAGAGCTGCTAACAGGGAAGAAAGCTGTTTCGTTTGAGAGGCCAGAAGAGGAAGTGAATCTGGCAATGCACTTCCTTTCATACTTGAAACAGGGTCACCTACATGAAGTTCTTGAGGATGGAATAATGAATAATGAAAATAAGGAGAGGGTGAAAGAGGTGGCTATGCTCGCAGCAAGGTGTGTGAGATTAAGAGGAGAGGAGAGACCAAGCATGAGGGAAGTAGCAGCGGAATTGGAGGGAATAAAGAAGGTGGGGGATCAGTTAGGGGTGAAAAAAGAGCTGAATTTGGAGGAAGCTCAGACATTGCTGGGAGAGACATCCAAGTTTAGTGAATATGGAGATAGCATTGATCATGGAAATAGAGTTTGGGATAGTATTACGGATCATGTTCTAATTGACTTTGACAGCGGTAGATGA 1758 0.4477 METMRLTKLWLWIPLLLVAAAEAQSLEGCLNKCGDVEIPYPLGIGVQPRTGRNCFLQESFELTCNTSTSTLFYGDHPVSNISVQGGNLDISMSVSKVCYNQRGGAIPNAHSLVNNPSFTVSSTQNKFISVGCDTLGLIKFQNNRTSYGGCVTLCSAPPQQDLNDKTCSGTGCCQVDIPVGMRNISVIASSVFNHTNVSDFNNCRYGFVTKQSWFNFSVDYLRDFPFDLVPLVLDWTVSNQTCHAASTRSDYACTANTDCADSDDGFGYNCKCKPGFDGNPYHPDGCHDVDECQESTNNCISKENCRNTIRSFECYCPPGYSGNGTTAGGCYPPLSKTPLTMVFTGVSIGLAAFFMSMSWLYLVSQKRKHMKQKEKFFRQNGGSILQQQLSGRHDTSLAVKIFTAEELKRATNNYHDNLIIGRGGFEYMQTNQLTEKSDVYSFGVVVIELLTGKKAVSFERPEEEVNLAMHFLSYLKQGHLHEVLEDGIMNNENKERVKEVAMLAARCVRLRGEERPSMREVAAELEGIKKVGDQLGVKKELNLEEAQTLLGETSKFSEYGDSIDHGNRVWDSITDHVLIDFDSGR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2452 585 Pfam Calcium-binding EGF domain 288 330 IPR001881 GO:0005509
Acco10g2452 585 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Acco10g2452 585 SMART egf_5 241 287 IPR000742 -
Acco10g2452 585 SMART egf_5 291 331 IPR000742 -
Acco10g2452 585 FunFam Fibrillin 2 287 328 - -
Acco10g2452 585 Pfam Wall-associated kinase 164 273 IPR013695 GO:0004674|GO:0016020
Acco10g2452 585 Gene3D Transferase(Phosphotransferase) domain 1 403 546 - -
Acco10g2452 585 SUPERFAMILY EGF/Laminin 288 323 - -
Acco10g2452 585 ProSiteProfiles EGF-like domain profile. 288 326 IPR000742 -
Acco10g2452 585 ProSitePatterns Calcium-binding EGF-like domain signature. 288 314 IPR018097 GO:0005509
Acco10g2452 585 CDD EGF_CA 288 322 - -
Acco10g2452 585 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 425 IPR045274 GO:0007166
Acco10g2452 585 SMART egfca_6 288 331 IPR001881 GO:0005509
Acco10g2452 585 Gene3D Laminin 238 330 - -
Acco10g2452 585 SUPERFAMILY Protein kinase-like (PK-like) 426 523 IPR011009 -
Acco10g2452 585 FunFam Wall-associated receptor kinase 2 240 286 - -
Acco10g2452 585 Pfam Wall-associated receptor kinase galacturonan-binding 29 86 IPR025287 GO:0030247
Acco10g2452 585 Pfam Protein tyrosine and serine/threonine kinase 425 525 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2452 Acco-ChrAcco10 35966219 35968856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2452 394 585 Receptor kinase-like Gene Family AT1G21230 39.086 2.11e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Acco10g2452 PK_Tyr_Ser-Thr 1.4e-09 CL0016