Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2442 ATGGAAACTGAGGAGGGAACAACCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCAGTGCCTGAAGAATAATGGGGTTGCAGATAGCAACGATGTTAGAAAAGTGGTTCGGCCCTTTAACTGTGAAGCTGTGAATAACGGGGTGGTAATAGCTGACAGGAACGATGTTGCTCAAGGGGACTCTGGTGTAGGTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTGAAGTTGAATTCAGAAAGCAAAGCTCACAAAGATTGCAGAACATACTCAGAAGCTGCAAGTCACATGGATGTAAAGAAATCACGTAATGTAGCTGTAGGAAATAATTTGGACAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCATTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCTCTTCTGCGCTTTCCTAAAATTAGTTGTGCCACTACTTTAAAGGAAACATGTAAAATTGACAAAGTTGGACAAGATTACTCTTCACACGTTGAGCCGATGTCTAATAGATTACAGAAGGAAGTTAATGGGCATGCAAATGTCTTGTGCAATGGGTCTTATAATGAGTCAGATGGTCCTAACGTAAATGAGATGTGTCGGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCATTGTGTAAAGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCGCCCACACTTTTTTTGTCAGATGTTGAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCAAGAACTTTCTACTGCGAGCAGGCTGGAATTTCAGTGCATAGCACATTCAAAGATGGAAAACAGGAGTTCTATAATCAGGAATCTGATTCTCACATGAAACCAGAGCAGACAGAAGATGTTGGCATGTATAAGATCTGCACTTGCAGGCATTGTGGAAACAAAGCAGATGGAAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTTCCATATCTCCTGTATTGAGCCTCCCGTCGAAGAGATACCCCACAAGAGCTGGTATTGTGCCAAATGCATTGCTAGTGGAGTCGTGTCTACACATGAAAATTGTGTGGTATGTGAAAGGTTGAATGACTCCAAGACCCTGAACTTTGATGAAAGCTTCCCTGAAAATGGGGAAACAATCAATGAATTCGAAGAGAATTCTTATTGCTCCTATGATGGGGCTCAAGCATCTAGAAGGGAGGAAATTGACACGACCTGCAAAGTTTGTAAAAATGAAGTGGATGGTGAAAGTATTAAAATCTGTGATCACCCTGCCTGCTCGAAAAAGTATCATGTAAGGTGTTTGACAAGTAAACAATTTACATCATATGGTCCCTGTTGGTACTGCCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATAGTCAGATTGTTCTCTGTGATGGCTGTGATGATGGATACCACATATATTGCATGAAACCTCCCCGAGCTTCTATTCCCAAGGGAAAATGGTTCTGCGGGGAATGTGATACAGGGTTGCAAGTAATACAACAGGCGAAAAAATTATATGAGAGTAAAAAGCAGAAAAAAGCAAGTGAAGATGGCTCAAAACCAAGTGATAGATTTGAAAAAAATTGGAACGGTAAACATGGACGAGATTTGGATAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTCGAAGAGGACTTGGCTGCAACCCAGACGTAG 1845 0.4098 METEEGTTNGDNTECSEAVQCLKNNGVADSNDVRKVVRPFNCEAVNNGVVIADRNDVAQGDSGVGESFRTYKRRKHVKLNSESKAHKDCRTYSEAASHMDVKKSRNVAVGNNLDKHSHAHWGNVVLMHLYQSLGDDKGGIEGCMREALLRFPKISCATTLKETCKIDKVGQDYSSHVEPMSNRLQKEVNGHANVLCNGSYNESDGPNVNEMCRRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFLSDVEQVWRKLQDAGNEIVSLAKGLSNMSRTFYCEQAGISVHSTFKDGKQEFYNQESDSHMKPEQTEDVGMYKICTCRHCGNKADGKDCLVCDSCEEMFHISCIEPPVEEIPHKSWYCAKCIASGVVSTHENCVVCERLNDSKTLNFDESFPENGETINEFEENSYCSYDGAQASRREEIDTTCKVCKNEVDGESIKICDHPACSKKYHVRCLTSKQFTSYGPCWYCPSCLCQVCLTDKDDSQIVLCDGCDDGYHIYCMKPPRASIPKGKWFCGECDTGLQVIQQAKKLYESKKQKKASEDGSKPSDRFEKNWNGKHGRDLDKGGGMDMLLTAANTLNFEEDLAATQT 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2442 614 FunFam PHD finger protein EHD3 isoform A 230 391 - -
Acco10g2442 614 SUPERFAMILY FYVE/PHD zinc finger 497 547 IPR011011 -
Acco10g2442 614 Gene3D - 234 391 - -
Acco10g2442 614 SMART PHD_3 500 543 IPR001965 -
Acco10g2442 614 SMART PHD_3 342 388 IPR001965 -
Acco10g2442 614 SMART PHD_3 449 497 IPR001965 -
Acco10g2442 614 PANTHER OS02G0192300 PROTEIN 210 398 - -
Acco10g2442 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 544 IPR013083 -
Acco10g2442 614 MobiDBLite consensus disorder prediction 559 590 - -
Acco10g2442 614 SUPERFAMILY FYVE/PHD zinc finger 332 388 IPR011011 -
Acco10g2442 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 497 IPR013083 -
Acco10g2442 614 ProSiteProfiles Zinc finger PHD-type profile. 495 545 IPR019787 -
Acco10g2442 614 MobiDBLite consensus disorder prediction 559 591 - -
Acco10g2442 614 Pfam PHD-finger 498 543 IPR019787 -
Acco10g2442 614 Pfam PHD-finger 343 388 IPR019787 -
Acco10g2442 614 ProSiteProfiles Zinc finger PHD-type profile. 340 390 IPR019787 -
Acco10g2442 614 SUPERFAMILY FYVE/PHD zinc finger 445 500 IPR011011 -
Acco10g2442 614 ProSiteProfiles Zinc finger PHD-type profile. 447 499 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2442 Acco-ChrAcco10 35907390 35913320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2442 497 564 C2H2 Transcription Factor Family AT3G01460 41.176 2.25e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco10g2442 PHD 7.4e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2442 10 35907390 35913320 Acco10g2442 10 35907390 35913320 ECH