Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2367 ATGGATGAATACGTGGAACTCGGACAACCTCAAGGGGGTGTGGTGTGGAGAAATGGTCAAATGCTGCCATTTACGCAAGTGGACAACAGTGGGAAAATGGCGCAAACGCTAGCAATCCCTGTAGCGCCTTCTGTGTCTGTTATTTACGGTACTTGCGCTTCAAGTTCGCTTTCAAGAAGCGTCTCTTTCCGATTCTCGACCCCTCCCAAGGTTCAAGGTCTAAGCATCCAATGTGTTCGTGTTGGAGGTGTGGAGATCCCAAACAGCAAGCGAATTGAGCTTTCACTCCAGTATATACATGGAGTTGGACGAAGCAGAGCTCGAAAAATCCTCTGCGACTTAAACATGGACAATAAAATTACAAAGGACTTGAATGAGGAGGAACTCATCACTCTCAGAGATGAAGTCTCCAAGTACGTGATTGAAGGCGACTTGAGGAGGTTCAATGCACTTAATATAAGGAGATTGAAGGAGATCCAATGCTACAGAGGGATCAGACATATTCAGGGGCTGCCGTGCAGAGGACAACGCACCAAGAACAATTGCCGGACCTTGAAGGGGAAGAAGGTCACCATTGCAGGAAAGAAGAAGAAGTAA 597 0.469 MDEYVELGQPQGGVVWRNGQMLPFTQVDNSGKMAQTLAIPVAPSVSVIYGTCASSSLSRSVSFRFSTPPKVQGLSIQCVRVGGVEIPNSKRIELSLQYIHGVGRSRARKILCDLNMDNKITKDLNEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVTIAGKKKK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2367 198 Gene3D - 79 147 - -
Acco10g2367 198 ProSitePatterns Ribosomal protein S13 signature. 163 176 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco10g2367 198 Pfam Ribosomal protein S13/S18 80 184 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco10g2367 198 Hamap 30S ribosomal protein S13 [rpsM]. 78 194 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco10g2367 198 NCBIfam 30S ribosomal protein S13 80 189 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco10g2367 198 SUPERFAMILY S13-like H2TH domain 79 190 IPR010979 GO:0003676
Acco10g2367 198 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 74 196 - -
Acco10g2367 198 FunFam 30S ribosomal protein S13 75 147 - -
Acco10g2367 198 FunFam 30S ribosomal protein S13 148 197 - -
Acco10g2367 198 Gene3D 30s ribosomal protein s13, domain 2 148 198 IPR027437 -
Acco10g2367 198 ProSiteProfiles Ribosomal protein S13 family profile. 81 187 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2367 Acco-ChrAcco10 35339643 35342988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2367 77 196 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.137 6.72e-06 42.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2367 10 35339643 35342988 Acco10g2367 10 35339643 35342988 ECH