Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2353 ATGCGTCCTTCAAAGTCACGTCAAGTTCATCCCGCCCCAGTTCAGGGTTCCCGTCTCGCCCCTAATATCTGGCAAGCATGCGCCGGTGGATCCTTTCGGATCCCTCCTCTTCATTCTAGGGTTTATTACTTCCCTCAGGGCCATATTGAGCATGCCTCGTCGGCTCCTCTATACCTTAACCCTCTAATCTTCTACAGGCCCCTCATTCTCTGTCGCGTCTCCGCCATTGAATTTCTTGCTGACCCTGTCTCTGATGAGGTATTTGCCAAGCTTTCGCTCCTTCCTTTGGGTGATCACAGCTCCGATCAGTCTCCCGACTCCTTGAAAGTGCCGGACGATGACAAGATTGTGTCGTTTGCGAAGGTTCTGACGCCTTCTGACGCGAACAATGGCGGTGGATTCTCTGTTCCTCGGTACTGTGCTGAGACCATCTTTCCGCCTCTGAACTTCAAGGTCGAACGACCCAACCAGGTATTACACGTGACGGATGTTCACGGTATTGACTGGGACTTTCGTCACATTTATCGGGGCACACCGAGGCGGCACTTGCTCACTACTGGCTGGAGTAAGTATGTCAATAGCAAGAAGTTGGTTGCTGGTGATTCGGTGGTTCTCATGAAAGATTCCAGCCAAAAAATATCCATCGGGATTCGCAGAGCTGTGCGATCTGCTAAATTAACTGCCGTCGATTGCTCCGTATTGTCTTCCCAGCCTGGCGGGGTGGGAAATAACCCTGAGGGCGAGCAGCAGCAACAGGGCCATGTAGGTTCCGGAGGGAAAGAACGGGGGTTTTCAAGGAACGGCAAGGGGAAATTGTCGGCTAAGGAAGTTGCTGATGCTGCAGAATCGGCAGCGCTAAACATGCCATTTGAGGTTGTGTATTATCCAAGGGTGGGCTGGTCGGACTTTGTGGTGAAGGCGGAAGATGTGGAGAAAGCTTGGAATGTCGCATGGACTTCCGGAATGAGAGTTAAAATGAAAGTGGAGACAGAGGATTCGTCCCGGATCACATGGTTTCAGGGTACAGTATCTTCTGCATCTGTTCCTGATGATGGACTTTGGCGGAGTTCTCCATGGCGTATGCTTCAGGTTATGTGGGATGAACCTGAAGTCTTGCAGAATGCCAAGCGAGTGAGCCCCTGGGAGGTTGAACTTGTTTCCTCTGCGCTTCCCCCTAATGCAGTATTCCCTCATGCAAAAAGGTTTAGAGCTGCTCAGTATTGTGGGGTGGCAACTGATAGAGAGGGAGACCCCTTCTTTTCTAATACCGGTTTGACTAATTCAGCAATGGGGCACTCGAACCCATCATTGTTGAATTACAATACTGTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATCATATGTACCAAGTTTCTCCAACTTTGGAATTGCTAATTCCCATCTGTATATTGGTAATACATTTGGGAACATGGTACCCATGATGAGAACTTCTATGTCAACAGAACCAAATACTGACCGTTCTCAGTCTAACAGTTTGTCGCCTGAAAGCCTGAGTAGTTTGCAGGGCTCTGGCACAGAGCTTGTTGGGACACCAGGTTCCACCTCAGAAAGACCAAGTTCAATTCATTTATTCGGTAGGCACATAAAGGTGGTACAGCCTGTTGAAAGTGGTTCCCAGGCTCTTGAGGGCACAGCAGATGAAGGTAGTAATGGCCGCAACGAGACTGAAGAAGGCGTTGACCATTGA 1713 0.4985 MRPSKSRQVHPAPVQGSRLAPNIWQACAGGSFRIPPLHSRVYYFPQGHIEHASSAPLYLNPLIFYRPLILCRVSAIEFLADPVSDEVFAKLSLLPLGDHSSDQSPDSLKVPDDDKIVSFAKVLTPSDANNGGGFSVPRYCAETIFPPLNFKVERPNQVLHVTDVHGIDWDFRHIYRGTPRRHLLTTGWSKYVNSKKLVAGDSVVLMKDSSQKISIGIRRAVRSAKLTAVDCSVLSSQPGGVGNNPEGEQQQQGHVGSGGKERGFSRNGKGKLSAKEVADAAESAALNMPFEVVYYPRVGWSDFVVKAEDVEKAWNVAWTSGMRVKMKVETEDSSRITWFQGTVSSASVPDDGLWRSSPWRMLQVMWDEPEVLQNAKRVSPWEVELVSSALPPNAVFPHAKRFRAAQYCGVATDREGDPFFSNTGLTNSAMGHSNPSLLNYNTVPAGMQGARQDLSYVPSFSNFGIANSHLYIGNTFGNMVPMMRTSMSTEPNTDRSQSNSLSPESLSSLQGSGTELVGTPGSTSERPSSIHLFGRHIKVVQPVESGSQALEGTADEGSNGRNETEEGVDH 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2353 570 SUPERFAMILY DNA-binding pseudobarrel domain 106 226 IPR015300 -
Acco10g2353 570 MobiDBLite consensus disorder prediction 483 570 - -
Acco10g2353 570 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Acco10g2353 570 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco10g2353 570 MobiDBLite consensus disorder prediction 483 529 - -
Acco10g2353 570 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Acco10g2353 570 CDD B3_DNA 118 208 IPR003340 GO:0003677
Acco10g2353 570 MobiDBLite consensus disorder prediction 237 256 - -
Acco10g2353 570 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco10g2353 570 MobiDBLite consensus disorder prediction 237 271 - -
Acco10g2353 570 Gene3D - 318 390 - -
Acco10g2353 570 FunFam Auxin response factor 117 221 - -
Acco10g2353 570 SMART B3_2 119 221 IPR003340 GO:0003677
Acco10g2353 570 Gene3D - 116 221 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2353 Acco-ChrAcco10 35238289 35241517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2353 21 570 B3 DNA Binding Superfamily AT1G77850 46.208 5.04e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco10g2353 B3 3.8e-19 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2658 05 42066744 42070161 Acco10g2353 10 35238289 35241517 CCT
Acco10g2353 10 35238289 35241517 Acco10g2353 10 35238289 35241517 ECH