Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2328 ATGTCAGCTAACTGTAATATGCAATTTCAGCCGGATCCCTTCAAGGGTGAGCTCATGGAAGCACTTGAGCCTTTTATGAAAAGTGCTTCCACAACATCCTCACCCTCTCCGTACACCTTATCATCATCTTCTTCGAATTTATTTCTGTCTCCTCAACCTCCCTCTTCCAATTTCTTCCATTCCTCTCCTCCAGTCCCATCACAGCCCAATTGGTCTGCAGATGGTTACTCGCCATCGATGACCCATGTATTTTCCGACGGGTTATTCAACAACCAAAACTTGATTGGTTTCGAGCAGCCAACTCTTCCTTTTGGGCTCAACAACCAGACTCTGTCTCAGACTGACCAGTTTCAACCTCAGATCCTTCACCAGAATCACCAAGATGTGAACTTGCATCAAAATACCCTCAGCTTCTTGAGCCCCAAGCCTATTCCCATGAAGCAGGTGGCTGCATCATCTAAGCCCACCAAGCTGTACAGAGGTGTTAGGCAGCGGCATTGGGGAAAATGGGTCGCCGAGATCCGTCTTCCCAAGAACCGGACCCGCCTCTGGCTCGGCACCTTCGATACTGCCGAAGAAGCTGCCCTCGCCTATGACAAAGCCGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTTAACTTCCCCACCCTCCGTCACCATGGTTCCAGTATTGAGGGAGAATTCGGGGAGTACAAGCCTTTACATTCCTCTGTAGATGCAAAGCTTCAAGCAGTTTGCGAAAACATGGCTGAAATGCAGAAACAGGGAAAGTCGGAGAAGCCAAAGAGGTCTTCAGGGCGGTCCAAGTCAGGTTCCAAGGCCGCTCAGCCGCAGACGTTGACGTTCTCGGACGAGCAGGCGGTGGCCGGCGAAGCTGATCTGAAGGCAGCGGAAAACTCTTACAATAAGGTGGATACTTCCTCGTCTGCGGTGATGACTGAGAGTGGCGAGTCTGGTGATTCATCTCCTCTGTTAGATTTAACGTTCGGCGATGTCAGTGAGCCTCAGTGGGAAAGTATGGCAGAAACTTTTAATCTGCAGAAGTACCCTTCTGAGATTGACTGGGCATCATTATTATGA 1080 0.5 MSANCNMQFQPDPFKGELMEALEPFMKSASTTSSPSPYTLSSSSSNLFLSPQPPSSNFFHSSPPVPSQPNWSADGYSPSMTHVFSDGLFNNQNLIGFEQPTLPFGLNNQTLSQTDQFQPQILHQNHQDVNLHQNTLSFLSPKPIPMKQVAASSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPTLRHHGSSIEGEFGEYKPLHSSVDAKLQAVCENMAEMQKQGKSEKPKRSSGRSKSGSKAAQPQTLTFSDEQAVAGEADLKAAENSYNKVDTSSSAVMTESGESGDSSPLLDLTFGDVSEPQWESMAETFNLQKYPSEIDWASLL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2328 359 MobiDBLite consensus disorder prediction 303 322 - -
Acco10g2328 359 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Acco10g2328 359 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Acco10g2328 359 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Acco10g2328 359 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Acco10g2328 359 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 358 - -
Acco10g2328 359 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Acco10g2328 359 FunFam Ethylene-responsive transcription factor 2 157 216 - -
Acco10g2328 359 MobiDBLite consensus disorder prediction 268 284 - -
Acco10g2328 359 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Acco10g2328 359 MobiDBLite consensus disorder prediction 251 284 - -
Acco10g2328 359 MobiDBLite consensus disorder prediction 53 73 - -
Acco10g2328 359 MobiDBLite consensus disorder prediction 303 330 - -
Acco10g2328 359 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Acco10g2328 359 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2328 Acco-ChrAcco10 35030555 35031634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2328 4 359 AP2-EREBP Transcription Factor Family AT1G78080 51.852 7.62e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco10g2328 AP2 8.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2629 05 41832616 41833653 Acco10g2328 10 35030555 35031634 CCT
Acco10g2328 10 35030555 35031634 Acco10g2328 10 35030555 35031634 ECH