Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2304 ATGGCTTACCCGCATTACCGATCACAGTTCGGCGACACAACATTCACCAAAGTGTTTGTGGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAGATATTTCGAGCAGTTCGGAGACATTCTCGAGGCTGTTATAATCACCGATAAGAACACTGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCCAGAAGGGCCTGTGCCGATCCAAACCCAGTAATAGATGGAAGAAGAGCCAACTGTAACATTGCTTCTCTGGGACGTCCTCGACCTTCCCCACCCCGCGATCGGAAGAATACATTTCGAGGAGGAAGCACATCATCACAGAGTGGAGCATCATACGGTAGCGCTCCGGCAGCGGTGCCACCGCCTCCTCCACCTCCGGCGCCGGCGGGGCATGGGCTGATGTACCCGCCATATGGATACTCTCCCTACTCTCCTGATTACGGCTACCACCAAGCGACACTGTACAACCCCCAGATTCAGCTGCCACAATACTACCAGCAAGTTTATGGAGCTTCATCATCAGGTGTGAGTTCCCCATATTACTACGGTTATTCAGTGCAGCCACCCAGAGCCTCTTATTCTACGCCCCAGCCTCATCGCCTGCCACCTGGACCCCCCTATCTGCAGTACTACCCTTACCCTCCTTCACCACCTTCACCCGCACCCGCACCCCCACCACCAGTGGATCTCTCCTTCCCCGCTTATCGTCCCCCTCGACAACCCACACAGTTGAGGCAGCCCTTCCCTCCCTCTACAGATTCACAGCCCCAACAGACTCAGCAGCGTACCTCCTCTGAGACGACGGCCGGAGTAGTGGTTACGGCGGCGGCTTCATCAGAGAGTCCAAATACCCATGGGAAAAACTAA 894 0.5459 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRDRKNTFRGGSTSSQSGASYGSAPAAVPPPPPPPAPAGHGLMYPPYGYSPYSPDYGYHQATLYNPQIQLPQYYQQVYGASSSGVSSPYYYGYSVQPPRASYSTPQPHRLPPGPPYLQYYPYPPSPPSPAPAPPPPVDLSFPAYRPPRQPTQLRQPFPPSTDSQPQQTQQRTSSETTAGVVVTAAASSESPNTHGKN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2304 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Acco10g2304 297 MobiDBLite consensus disorder prediction 87 139 - -
Acco10g2304 297 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Acco10g2304 297 MobiDBLite consensus disorder prediction 106 122 - -
Acco10g2304 297 MobiDBLite consensus disorder prediction 125 139 - -
Acco10g2304 297 MobiDBLite consensus disorder prediction 204 254 - -
Acco10g2304 297 MobiDBLite consensus disorder prediction 200 297 - -
Acco10g2304 297 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Acco10g2304 297 SMART rrm1_1 17 89 IPR000504 GO:0003723
Acco10g2304 297 MobiDBLite consensus disorder prediction 255 297 - -
Acco10g2304 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Acco10g2304 297 CDD RRM_RBM24_RBM38_like 16 91 - -
Acco10g2304 297 Gene3D - 3 111 IPR012677 -
Acco10g2304 297 PANTHER BOULE-RELATED 6 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2304 Acco-ChrAcco10 34861168 34864126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2304 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.75e-15 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2304 10 34861168 34864126 Acco10g2304 10 34861168 34864126 ECH