Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2284 ATGGCACTAGAGGCTGTAGTTTTCCCACAGGATCCCTTCTCGTATAGTTGCTGCAAGGACTCATACTCCTTTGCCGCAGCCTGGAACCCCGGCGAGCATTGCTTCCGTGCAGAGGAAGAAAAATCCCCTGTCGGAGTACTCATCAGCAGTAACATGGAACCCAGACATGGCCATGCAACTTGGGATTCTAACTCTTCTCCTGATCAGGCCCGCCGATCACTTCTTTCCCCTGCCCCCTTGGGTCGGCGTAAACGACGTCGCACCAAGAGCTCCAAGAACAAGGAGGAGCTTGAGAACCAGAGGATGACTCACATTGCGGTGGAGCGCAATCGACGGAGGCAGATGAATGACTACCTGGCGGTGCTTCGCTCCTTGATGCCTCCATCTTTCGTTCAAAGGGGGGACCAGGCTTCTATAATAGGAGGCGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTCTTGCAGTCAATGGAGGGACGAAAGAAGAAGACGAAGCAACAATCAGAGGCTTGTAGCTCGCCGTTCGCCGAGTTCTTCACGTTCCCTCAGTACTCCACTCATGCAAATGACGGCAGTACCAGTTCCGAGCAATGGGCCGTCGCAGACATCGAGGTCACCATGGTGGACTCCCACGCCAGCCTCAAGATACTCTCCAAGAAACGTTCCAACCAGCTTACCAAGATCGTAGTCGGCCTTCAAGCCCTCCGCCTCACCGTTCTCCACCTCAACGTCTCCACTCACGACGACATGGCCCTTTACTCCGCCAGCGTCAAGCTTGAGGATGGGTGCGAGCTGAATACGGTGGATGAAATCGCTGCTGCTGTGAATCAATTAATGCGCAGAATCCAAGAGGAAGCGACTTTCTGA 867 0.5398 MALEAVVFPQDPFSYSCCKDSYSFAAAWNPGEHCFRAEEEKSPVGVLISSNMEPRHGHATWDSNSSPDQARRSLLSPAPLGRRKRRRTKSSKNKEELENQRMTHIAVERNRRRQMNDYLAVLRSLMPPSFVQRGDQASIIGGAINFVKELEQLLQSMEGRKKKTKQQSEACSSPFAEFFTFPQYSTHANDGSTSSEQWAVADIEVTMVDSHASLKILSKKRSNQLTKIVVGLQALRLTVLHLNVSTHDDMALYSASVKLEDGCELNTVDEIAAAVNQLMRRIQEEATF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2284 288 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Acco10g2284 288 Coils Coil 147 167 - -
Acco10g2284 288 SMART finulus 105 156 IPR011598 GO:0046983
Acco10g2284 288 Gene3D - 97 177 IPR036638 GO:0046983
Acco10g2284 288 CDD bHLH_AtFAMA_like 102 174 - -
Acco10g2284 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 170 IPR036638 GO:0046983
Acco10g2284 288 PANTHER MAX DIMERIZATION, MAD 58 286 - -
Acco10g2284 288 MobiDBLite consensus disorder prediction 56 72 - -
Acco10g2284 288 MobiDBLite consensus disorder prediction 55 100 - -
Acco10g2284 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2284 Acco-ChrAcco10 34741390 34742548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2284 1 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.667 2.32e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco10g2284 HLH 8.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2579 05 41447231 41448312 Acco10g2284 10 34741390 34742548 CCT
Acco10g2284 10 34741390 34742548 Acco10g2284 10 34741390 34742548 ECH