Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2283 ATGAAGAGTACCTCCAACAAGGAGGACCGTGGGGGCGCAGGCATCCCCAGACTGGTGAAACTTGAGCATGAACGTACCTGGGTTTCTGTGCCTCATGTTTCGGTACAGGCGCCGCCGTCACGTGATCAGTTCGTGGAGCCACCGATGGTGACCTACGACAACAAGACCATGGCCATCATCATGGGCGTGGTGGTCATCGTATTCTTCGTATCGGGCTTCGTTTCCCTGTACAGTCGTCAGTGCTGGAACCGACGCCGATCACGAGGCCATATCGACCTCACTTTTCCAATGGGGCTGCCGGGATCCAGTTCCCGGGCGCAGGGTCGGGGTGTAAGCCCGGAGATCATCCAGAGCTTCCCGACTTTCGTGTACTCGACGGTGAAGGGGGGGAGAGGGGCCCTGGCATGCGCGGTGTGCCTGAACGAGTACGAAGACGACGAGACGCTGCGTTTTATCCCGAAATGCAGCCACGTGTTCCATCCCGAATGCCTCGACGGCTGGCTCAAGTCTCACTACACGTGCCCCCTGTGCAGGGCCAACCTGTTGGTTCCAGTAGCAGCACAGAGCGAGAGCGAGGAGACGCCTTTGGTCCCCATAGAAGTTTCAGATTCAGAGGAAGAAAGAGAGAGTGATAACGGAGGAGTGATTAGAGGGAATATAAGAATGAATAGGAGTAGGACAGTGAAGGAGAGGGGTCCAAGTCGGTCAAGGTCAACGGGATTTGTGATGGGGATACTATTTGGGAGGTCTCGGTCATCGGGAGATGGGTACGGGAGGGAGAACTGGGAGAGATATACACTGAGGTGGGAGGAAGTGAAGAGAGAGAGGAGGCTGAAGCGGACAAAGAGCTGCGTCGTCACATTTACCGGAATGAGCAGCGGCCGGAGAGGGTATCGAACGAGAAGCGTGGGCAGCAGCTACTCCCACTCACACTTCGCCTACGATCGCTTCATCCATTCTCATACACTACCCTTCAACCCTCCCGCCACTCCTTCATCTTCTTTGTGA 1008 0.5605 MKSTSNKEDRGGAGIPRLVKLEHERTWVSVPHVSVQAPPSRDQFVEPPMVTYDNKTMAIIMGVVVIVFFVSGFVSLYSRQCWNRRRSRGHIDLTFPMGLPGSSSRAQGRGVSPEIIQSFPTFVYSTVKGGRGALACAVCLNEYEDDETLRFIPKCSHVFHPECLDGWLKSHYTCPLCRANLLVPVAAQSESEETPLVPIEVSDSEEERESDNGGVIRGNIRMNRSRTVKERGPSRSRSTGFVMGILFGRSRSSGDGYGRENWERYTLRWEEVKRERRLKRTKSCVVTFTGMSSGRRGYRTRSVGSSYSHSHFAYDRFIHSHTLPFNPPATPSSSL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2283 335 PANTHER RING FINGER DOMAIN-CONTAINING 36 190 - -
Acco10g2283 335 CDD RING-H2_EL5-like 136 178 - -
Acco10g2283 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 183 IPR013083 -
Acco10g2283 335 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Acco10g2283 335 SMART ring_2 136 177 IPR001841 -
Acco10g2283 335 FunFam E3 ubiquitin-protein ligase ATL6 101 184 - -
Acco10g2283 335 Pfam Ring finger domain 135 178 IPR001841 -
Acco10g2283 335 SUPERFAMILY RING/U-box 115 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2283 Acco-ChrAcco10 34730317 34731324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2283 56 297 Rapid Response to Elicitors AT3G05200 38.462 3.11e-38 138