Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2281 ATGACAATCCACTCCCTCATTCCCCCTCCTCCCATTCTCCCACTCGATCATCACCATGGCCTCCGTTGCCTTGCCCTCTTCCTACTCGCCTTCCCGGCCACCTCGCAGCTCCCCGCAGCGCCTCCGCCTCCGACCACCGATCCCTTTGCCAGGCTTAAGTTCGACAAGAACATGGCCATCATCATGGTCATCCTGGTCCTCGTGTTCTTCATTCTGGGCTTCCTTTCCATCTACACTCGCCAATGCGCAGAGCGCAGAATGAGAGGAAGACTCGACCTCGCTCTCCCCATCGGCATCAGCGGCCGGCGACCGCGTGGTCTTGACCCCGAGATCATCGACAGTTTTCCCACTTTCGTTTACTCCTCCGTCAAGGGGCTTAAGATGGGGAGGACCTCGCTGGAATGCGCCGTCTGCTTGAACGAGTTCCAAGACTATGAAACTCTGCGTTTGCTACCCAAATGCAGCCACGTGTTTCATCCTGACTGTATCGATCTTTGGCTGTCCTCTCACTCCACCTGCCCCCTCTGCCGGGCCAACCTTATTCCTAAACCCGGTGATTCATCCTTCGTCGCCGTTCAGATCCCCAATCCGGACGTCGATTCCCCTCAGCCTGATTCGAGTCCTAATACTCGTGAGGTTCCCCATGACAACATCAATACGGCGGCCCCGGAAACTCCGAGTCTGAGCCGAAATCAGACCTTGAACCGGAGCCGGATACCTGGGTCAAAGTCGACGGGGTTCCGATTGGCCGGATTGTTCCCGCGTTCTCACTCCACGGGTCATTCCTTGCAGATTCAGCCCGGAGAGAATTGGGAAAGGTTTACTCTGAGACTACCGGAGGATGCCCAAGAGCAGTTACTGAAGCGCACAAATAGTTGCGTGGCGTTCACAAGGGAGAGCAGTCAGAGGAGGGGTTATAGGACAAGAAGTTTGGGGAGTGGACGCGGAAGGAACTATTTCCAGTACGAGCGATTCGGCGGCGAGGGGCGGCCGGAGCAGTGGGGCTTCACGATGAGGCCGCCGTTTTTTAGCAGGAGTAGTTCGATGGTGGCCAACAAGGCACCGGTGGATCCATCGGAGTTGGCTATGGACGACATCGGGGAACGTTCTTCTGATCCATTGTTTCCCGGAAACAAAGATTAG 1143 0.5634 MTIHSLIPPPPILPLDHHHGLRCLALFLLAFPATSQLPAAPPPPTTDPFARLKFDKNMAIIMVILVLVFFILGFLSIYTRQCAERRMRGRLDLALPIGISGRRPRGLDPEIIDSFPTFVYSSVKGLKMGRTSLECAVCLNEFQDYETLRLLPKCSHVFHPDCIDLWLSSHSTCPLCRANLIPKPGDSSFVAVQIPNPDVDSPQPDSSPNTREVPHDNINTAAPETPSLSRNQTLNRSRIPGSKSTGFRLAGLFPRSHSTGHSLQIQPGENWERFTLRLPEDAQEQLLKRTNSCVAFTRESSQRRGYRTRSLGSGRGRNYFQYERFGGEGRPEQWGFTMRPPFFSRSSSMVANKAPVDPSELAMDDIGERSSDPLFPGNKD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2281 380 CDD RING-H2_EL5-like 134 177 - -
Acco10g2281 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 182 IPR013083 -
Acco10g2281 380 Pfam Ring finger domain 134 177 IPR001841 -
Acco10g2281 380 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Acco10g2281 380 FunFam E3 ubiquitin-protein ligase ATL6 98 183 - -
Acco10g2281 380 MobiDBLite consensus disorder prediction 347 380 - -
Acco10g2281 380 SUPERFAMILY RING/U-box 129 185 - -
Acco10g2281 380 SMART ring_2 135 176 IPR001841 -
Acco10g2281 380 MobiDBLite consensus disorder prediction 192 241 - -
Acco10g2281 380 PANTHER RING FINGER DOMAIN-CONTAINING 41 180 - -
Acco10g2281 380 MobiDBLite consensus disorder prediction 199 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2281 Acco-ChrAcco10 34708590 34709732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2281 16 346 Rapid Response to Elicitors AT3G05200 38.177 6.26e-64 207