Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2272 ATGGAATTCGAGGAGCAAGATCAGGAGCACGAAGAGTCAGAGGAAGAAATGGGGATTCCCGTGCCCCCGACCAGTAACGACACGGCCCGGTCCAAACCCGAGGGAGGTGCATCCGCCCCGACTGGTGGCAGGAAAGGCGGTCCGATGGGAACAGTCAGATACAGAGAGTGTCAAAAGAATCACGCAGTCAGCATCGGAGGCCACGCCGTTGACGGTTGCGGTGATTTTCTGGCGGCGGGAGAGGAAGGAACGCTCGACGCTCTCAAATGTGCCGCCTGCAACTGTCACCGCAACTTCCACCGCAAGGAGATCGAGGGAGAAACTAGCTCCTTTCACCTACCGCAGCCGCACCACCCCCAGTACCACCATCAATTTCCTTCTTACTACCGCGGGCCGCCCCCGCTGCCGGGCGCAGGGTACCTCCACCATCATCTAGCAAATCCGGCGATGGCACATCACCTGCCTTTGCCTCTACCAGCCGCGGCATCCGGCGGGGGACTGAGTAGAGAAGAGGAAGACATGTCCAATCCGAGCAGCAGCGGAGGCGGAGGCTTCGGCGGCGGAGGGAGCCGGAGTGAAAGGAAGAAACGGTTTAGAACGAAGTTCACGCCGGAGCAGAAGGAGAAGATGCTGGCATTTTCGGAGAAGGTTGGGTGGAGAATCCAGAAGCATGACGAACCGGCGGTGGAGCAATTCTGCGCGGAGACTGGCGTCAAGAGACAGGTACTCAAGGTTTGGATGCATAATAACAAAAACACTCTCGTTTTATTTTGGGTGGATTCTGATGATGATAGTGATTTCCGATATGATATTTCCCAGCTTGCTGTTTCGAATTCTTTGGTAATAAGCACCGATCCTCAAGACATTCAGCCTGCAGCTGCTGGAGGGCAGGCTACGTGGCTAATCGATACTTTGATCTTCCTCTTCGATCTCTTGCAAGTTTGA 945 0.5545 MEFEEQDQEHEESEEEMGIPVPPTSNDTARSKPEGGASAPTGGRKGGPMGTVRYRECQKNHAVSIGGHAVDGCGDFLAAGEEGTLDALKCAACNCHRNFHRKEIEGETSSFHLPQPHHPQYHHQFPSYYRGPPPLPGAGYLHHHLANPAMAHHLPLPLPAAASGGGLSREEEDMSNPSSSGGGGFGGGGSRSERKKRFRTKFTPEQKEKMLAFSEKVGWRIQKHDEPAVEQFCAETGVKRQVLKVWMHNNKNTLVLFWVDSDDDSDFRYDISQLAVSNSLVISTDPQDIQPAAAGGQATWLIDTLIFLFDLLQV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2272 314 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Acco10g2272 314 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Acco10g2272 314 SUPERFAMILY Homeodomain-like 181 253 IPR009057 -
Acco10g2272 314 MobiDBLite consensus disorder prediction 161 201 - -
Acco10g2272 314 Gene3D - 184 255 - -
Acco10g2272 314 NCBIfam homeobox domain, ZF-HD class 195 252 IPR006455 -
Acco10g2272 314 FunFam Zinc-finger homeodomain protein 2 188 255 - -
Acco10g2272 314 MobiDBLite consensus disorder prediction 1 51 - -
Acco10g2272 314 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 254 - -
Acco10g2272 314 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2272 Acco-ChrAcco10 34644764 34647190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2272 1 259 ZF-HD Transcription Factor Family AT4G24660 51.538 1.74e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco10g2272 ZF-HD_dimer 1.5e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2561 05 41333747 41334520 Acco10g2272 10 34644764 34647190 CCT
Acco10g2272 10 34644764 34647190 Acco10g2272 10 34644764 34647190 ECH