Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2248 ATGTCTTCACGCCAATGGGATTCCGATTCCTCTGGCGATAAGATTTTCTGGGTTGCCTCTTTCCCAGATCTGGAACTCAGTGACGGGAAAAAAAAAGACATGGTGAGGGAGAAGATTAAGATCAAGAAAATCGACAACAAAACGGCGAGACAGGTGACATTCTCGAAGAGGAGGCAAGGGCTTATCAAGAAATCTCAAGAGCTTGCTGTTCTTTGTGATGCTGAGGTTGGTCTCATTATTTTCTCTGCTACAGGAAAGCTCTATGAATATTCCAGTACTAGCATAAAGGACGTCGTTACAAGGTATGATCTGCACTTTCGTGACAACAATGATCCATTGGACAGTCATTCCATAGAGCCGCAGAGCAGCAGTCAAAGCAGGTTGAGGAACCAGATAGCTGATAAAACCCACGAACTTCGGCAGCTGTACGGTGAGGATCTTGAAGGACTCGACCTCGATGATTTGCAGAACCTGGAGAAAAAGCTTGACCTGGGACTCTATAGTGTGAATCATCAGATTACGGTAAAGAGGAATACTGGTGACATGGCAGAACATCAGAGGAAGGTAGACTATTTGGCCGAAGTGAACGAGCAGATAAAGCAGAAGGTGGCAAGTATTTGTAAAGGAAAAGGCTTCATGACGAAGAACTCTGAGATAGGCAAGCTGAAAGGTGGTTCATCACGAACCATAAATAATAATGTTCTGGATTGCAATAATGGCCTTCGTATCGATGATGATACCTCTAGCACGTGTCTGAGGTTAGGGCTTCCCTTCCCTGATTGA 783 0.447 MSSRQWDSDSSGDKIFWVASFPDLELSDGKKKDMVREKIKIKKIDNKTARQVTFSKRRQGLIKKSQELAVLCDAEVGLIIFSATGKLYEYSSTSIKDVVTRYDLHFRDNNDPLDSHSIEPQSSSQSRLRNQIADKTHELRQLYGEDLEGLDLDDLQNLEKKLDLGLYSVNHQITVKRNTGDMAEHQRKVDYLAEVNEQIKQKVASICKGKGFMTKNSEIGKLKGGSSRTINNNVLDCNNGLRIDDDTSSTCLRLGLPFPD 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2248 260 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Acco10g2248 260 Coils Coil 182 202 - -
Acco10g2248 260 ProSiteProfiles K-box domain profile. 118 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco10g2248 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 190 - -
Acco10g2248 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 90 IPR002100 GO:0003677|GO:0046983
Acco10g2248 260 Gene3D - 46 112 IPR036879 GO:0003677|GO:0046983
Acco10g2248 260 MobiDBLite consensus disorder prediction 110 129 - -
Acco10g2248 260 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Acco10g2248 260 CDD MADS_MEF2_like 45 102 IPR033896 GO:0000977|GO:0045944
Acco10g2248 260 SUPERFAMILY SRF-like 36 103 IPR036879 GO:0003677|GO:0046983
Acco10g2248 260 MobiDBLite consensus disorder prediction 115 129 - -
Acco10g2248 260 Pfam K-box region 124 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco10g2248 260 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Acco10g2248 260 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Acco10g2248 260 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2248 Acco-ChrAcco10 34457977 34462111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2248 34 258 MADS-box Gene Family AT2G22540 43.673 2.86e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco10g2248 K-box 6.5e-11 No_clan