Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2238 ATGTACGAACAACTCCCATCAATGAACGTCACTAATCGGATCAGCACCGCAGAAGATGAAGATGGCGCTGGCATTGGCGCCGAATCAATTGATAATCACAACATCCATTACGAAACGCAAGCCCTCGAAGATGGCAGTGGTGGAGTCGGCGGCGTAGTGGAGGATGTGAACTCCGATACCGTATATGTTTCCGGTAGTGGTTCTGAATTGTCCATCCCTCACGAGGATCCTAGCCAACTTACGCTTTCATTCCGTGGTCAAGTATACGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAGTGTGAGGATCTAGCCCCTCAAAATGAGAGGGGTGGGATGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGTAGCCTCTTTAAACAGGTTTCGTCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTTGCTCTCAGGATGCACCGTAATAAGGGTCAGTTTACTTCTAAGAAGCAAGATGGAGCTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAGTCAATCAGAAACCTCGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGTGGGCCATCTGGACCAAGGTCACTGTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACTTTGAGGGACTTATCCAAGAAGAACCTCGAACATTCTCTTCCACCAGCTGAGCAGGTTGAACGGGATGATTCACATTCTCGGACGGCTAACCCTGCATATAACAATCTTGTGTTCTCTGATAATGATAAGCCGGCATAG 867 0.4787 MYEQLPSMNVTNRISTAEDEDGAGIGAESIDNHNIHYETQALEDGSGGVGGVVEDVNSDTVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDLAPQNERGGMDYPGRCSQPHRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSKKQDGANSLGTVQESGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNLEHSLPPAEQVERDDSHSRTANPAYNNLVFSDNDKPA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2238 288 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 252 - -
Acco10g2238 288 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Acco10g2238 288 SMART tify_2 73 108 IPR010399 -
Acco10g2238 288 ProSiteProfiles GATA-type zinc finger domain profile. 201 250 IPR000679 GO:0006355|GO:0043565
Acco10g2238 288 MobiDBLite consensus disorder prediction 255 270 - -
Acco10g2238 288 CDD ZnF_GATA 206 251 IPR000679 GO:0006355|GO:0043565
Acco10g2238 288 PANTHER GATA TRANSCRIPTION FACTOR 28 25 264 IPR045280 GO:0006355
Acco10g2238 288 MobiDBLite consensus disorder prediction 173 226 - -
Acco10g2238 288 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Acco10g2238 288 Pfam tify domain 76 107 IPR010399 -
Acco10g2238 288 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Acco10g2238 288 MobiDBLite consensus disorder prediction 255 288 - -
Acco10g2238 288 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Acco10g2238 288 MobiDBLite consensus disorder prediction 181 220 - -
Acco10g2238 288 Gene3D - 197 255 IPR013088 GO:0006355|GO:0008270
Acco10g2238 288 MobiDBLite consensus disorder prediction 1 16 - -
Acco10g2238 288 Pfam CCT motif 140 182 IPR010402 GO:0005515
Acco10g2238 288 MobiDBLite consensus disorder prediction 1 25 - -
Acco10g2238 288 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2238 Acco-ChrAcco10 34363497 34368511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2238 12 256 Tify Gene Family AT4G24470 57.312 3.25e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco10g2238 CCT 1.7e-14 CL0281