Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2237 ATGGCCGCCGTGAATCCACAACCTTTGCTGGCGCGTCCATTCGAGAAACACGTGCAGGGTCCAGTAGCAATAGAGGACGACGACGGTGACTATGAGGATGGGGGTGCTAGTGGCGATGCTATGGATGACTTGGAAGAGGGAAATGTTAATTCAGTGACTGTGCCAAACCATGGAGGTGTTGTTACGATGACCCGAACTAGTGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTGTTTCCTGCTGTGACACCAGAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACGTGATATGCCTGCATGTGCTCCTTCTGTTGAAGTACCATTTGATGAAGGCAACAAGGGCACATGTGATCCTCCAAAGCAGTTGAACCTTTCAAGGAGAATAGCCTCCTTGGTTAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAGATTAGGTACTCTGTGAGAAAAGAGGTGGCGCAAAGGATGCATCGCAAGAATGGGCAATTTGCATCCTTGAAAGAAAGTCCTGGTTCATCTAGTTTAGATTCTATGCAAAGCTTTCATCAGGATGGCACTCATTCTGGAACTTTACGTAGATGTCAACATTGTGGTGTTAGTGAAAATAATACTCCTGCAATGCGTCGTGGTCCAGCTGGACCAAGGACTCTATGCAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGTGCTGGAGACTCCTCTTGAGGTCAAGCCTATTATCCTGGAAGGAGAATTGCTTGGTATACATGACAAGCAAGGAATTTCGGAAGGTCCTTCCAAGGTCATCGCTGAAGGATCAAATAATCACGCTGTCAACCCCAGTGATGAGGACTTGTGGTCTGGTGAAAGCTTATCAAACGCACTGTCAGCAGGCTTTGTGCATTCTTCAGCAAATGATGATGAGCAGGAACCTCTGGCTGAGCTTTCTAATCCTTCCGACACAGATATTGACATTCCCGGAAACTTCGATTAG 1044 0.4665 MAAVNPQPLLARPFEKHVQGPVAIEDDDGDYEDGGASGDAMDDLEEGNVNSVTVPNHGGVVTMTRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDMPACAPSVEVPFDEGNKGTCDPPKQLNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSSLDSMQSFHQDGTHSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSVLETPLEVKPIILEGELLGIHDKQGISEGPSKVIAEGSNNHAVNPSDEDLWSGESLSNALSAGFVHSSANDDEQEPLAELSNPSDTDIDIPGNFD 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2237 347 Gene3D - 195 247 IPR013088 GO:0006355|GO:0008270
Acco10g2237 347 MobiDBLite consensus disorder prediction 1 37 - -
Acco10g2237 347 MobiDBLite consensus disorder prediction 171 193 - -
Acco10g2237 347 Pfam CCT motif 130 171 IPR010402 GO:0005515
Acco10g2237 347 PANTHER GATA TRANSCRIPTION FACTOR 28 4 340 IPR045280 GO:0006355
Acco10g2237 347 MobiDBLite consensus disorder prediction 285 333 - -
Acco10g2237 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 244 - -
Acco10g2237 347 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Acco10g2237 347 ProSiteProfiles GATA-type zinc finger domain profile. 194 250 IPR000679 GO:0006355|GO:0043565
Acco10g2237 347 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Acco10g2237 347 MobiDBLite consensus disorder prediction 281 347 - -
Acco10g2237 347 CDD ZnF_GATA 199 243 IPR000679 GO:0006355|GO:0043565
Acco10g2237 347 SMART tify_2 62 97 IPR010399 -
Acco10g2237 347 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Acco10g2237 347 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Acco10g2237 347 MobiDBLite consensus disorder prediction 170 193 - -
Acco10g2237 347 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Acco10g2237 347 Pfam tify domain 66 96 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2237 Acco-ChrAcco10 34353800 34359598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2237 17 242 Tify Gene Family AT1G51600 49.004 4.23e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco10g2237 CCT 1e-13 CL0281