Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2227 ATGATGATGTTGATCCTCACCAACTGTTTCCTGTTCTTCTTGCTGCTGCTGGTTTTGGTTCTGGGCTATGTCTCTTATCCAGGAGTGCGATTGGAAATTCAAGATAAGCATATTGTGATGGATAATGGCATAGTCCAAGTCATCTTATCAAATCCTGGAGGATCAGTCACCGGAATCCAATACAATGGAATTGACAATTTGCTTGAAGTCCAAAACATGGAATTTGACAGAGGTTACTGGGATGTTGTATGGAGCGAGGCTGGTAAAAATGGAACAAAGGGCACATTGGATAGGTTGGAAGCCACAAATTTTACAGTAATTGTTCAAAATGAAGAACAGTTAGAGTTGTCATTCACCAGAATGTGGCTGCCTTCCCTTGAGGGAAAGATTCCGCCCCTCAGTATCGATAAAAGATTTATAATGCTTCGTGGTTCATCGGGCTTCTACACTTACGCCATATACGAGCATTTGAAGGGATGGCCTGCCTTCAATCTTGATAATACTCGGATTGCATTTAAGCTTCGGAAAGATAAGTTCCATTACATGGTTGTAGCAGACGATAGGCAAAGATTCATGCCTCTGCCTGATGACCGGTTGAAAGGAAGAGGACAAGTTCTAGCCTATCCTGAAGCTGTCCTCCTTGTCGATCCTGTTGAGCCTGAATTCAAAGGGGAGGTGGATGACAAATATCAGTACTCGTGCGAGAGTCGCAACAACAGGGTTCATGGCTGGATATGTACGGATCAATCGGTTGGGTTCTGGCAAATTACGCCCAGTTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACATCACTTCTCACGTGGGCCCCACCATACTCTCTGTATTTCACAGCACGCATTATTCAGGAGCAGATCTAGTAATGAAATTCGGGGCCGAAGAAGAATGGAAGAAAGTGTATGGGCCCATTTTCATATACCTTAATTCTTTGTCTAACGGAGAAAGCCCGACCACGCTATGGGAAGACGCTAAAAAGCAGACGGTCAATGAAATAGAAAGGTGGCCCTATACATTTCCAGCTTCACAAGACTTTCCCTCATCTTACCAGCGAGGCAAGGTTAAAGGGAGATTACTGGTACAAGACAGGTATATCACTGATGGGTGTGTCCCAGCGAGTGGGGCTTATGTGGGATTAGCTGCAACTGGAGATGCAGGATCTTGGCAGAGAGAATGCAAGGGTTATCAATTTTGGACTATCACTGATGATAGAGGCTACTTCACAGTCACTGACATATGGGCTGGGCAGTATAATCTTTACTCCTGGGTCAATGGGTTTGTCGGCGATTATCGATATGACAATGTCATAAACATAACCTCAGGTTGTGAAGTTGATGTGGGGGAACTTGTTTATGAGCCTCCGAGAGATGGCCCTACATTGTGGGAAATAGGCATCCCTGATCGCACTGCAGCTGAATTCTATATCCCAGATCCAAATCCCAAGTACATTAACAGACTTTATGTCAAACATCCAGATAGGTATAGGCAATATGGATTGTGGGAGAGGTATGCAAATTTGTATCCAAATGAAGACTTGGTCTACAATATAGGAACCAGTGACTTCAAAAAAGATTGGTTTTTCGCTCAAGTTAATAGGAAGATAGATAACAACACATACCAAGAAACCACATGGCGAATTAATTTCAAGCTTGATTGTGTAAATACCAACGGAACCTACAAATTGCGATTGGCTTTAGCATCTGTACACTCTGCTGAGCTGCAAGTTCGGTTAAATAACTCAGAAGCAAACCCACCTTTGTTCACAAGTGGAGTGATTGGGAAGGAGAACACAATAGCCAGACATGGAATTCATGGGCTATATTGGCTGTTCAACGTTGATGTACAAGGCACTCTTCTTGTGCAGGGGAATAATACCTTTTTTCTAAAGCAACCAAGAAACATAAGTCCTTTTCAAGGGATTTTGTATGATTATATTCGTTTAGAAGGCCCCTCTTCTGTGACTAGTAACATATGA 1995 0.4321 MMMLILTNCFLFFLLLLVLVLGYVSYPGVRLEIQDKHIVMDNGIVQVILSNPGGSVTGIQYNGIDNLLEVQNMEFDRGYWDVVWSEAGKNGTKGTLDRLEATNFTVIVQNEEQLELSFTRMWLPSLEGKIPPLSIDKRFIMLRGSSGFYTYAIYEHLKGWPAFNLDNTRIAFKLRKDKFHYMVVADDRQRFMPLPDDRLKGRGQVLAYPEAVLLVDPVEPEFKGEVDDKYQYSCESRNNRVHGWICTDQSVGFWQITPSYEFRSAGPLKQYITSHVGPTILSVFHSTHYSGADLVMKFGAEEEWKKVYGPIFIYLNSLSNGESPTTLWEDAKKQTVNEIERWPYTFPASQDFPSSYQRGKVKGRLLVQDRYITDGCVPASGAYVGLAATGDAGSWQRECKGYQFWTITDDRGYFTVTDIWAGQYNLYSWVNGFVGDYRYDNVINITSGCEVDVGELVYEPPRDGPTLWEIGIPDRTAAEFYIPDPNPKYINRLYVKHPDRYRQYGLWERYANLYPNEDLVYNIGTSDFKKDWFFAQVNRKIDNNTYQETTWRINFKLDCVNTNGTYKLRLALASVHSAELQVRLNNSEANPPLFTSGVIGKENTIARHGIHGLYWLFNVDVQGTLLVQGNNTFFLKQPRNISPFQGILYDYIRLEGPSSVTSNI 664
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2227 664 CDD RGL4_C 468 655 - -
Acco10g2227 664 CDD RGL4_M 357 456 IPR029413 -
Acco10g2227 664 CDD RGL4_N 29 317 - -
Acco10g2227 664 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 34 658 - -
Acco10g2227 664 FunFam Rhamnogalacturonate lyase B 354 453 - -
Acco10g2227 664 Pfam Polysaccharide lyase family 4, domain II 380 452 IPR029413 -
Acco10g2227 664 Pfam Polysaccharide lyase family 4, domain III 466 654 IPR029411 -
Acco10g2227 664 SUPERFAMILY Galactose mutarotase-like 36 319 IPR011013 GO:0003824|GO:0005975|GO:0030246
Acco10g2227 664 SUPERFAMILY Galactose-binding domain-like 463 655 IPR008979 -
Acco10g2227 664 Gene3D - 354 453 - -
Acco10g2227 664 Gene3D - 31 328 IPR014718 GO:0030246
Acco10g2227 664 Gene3D - 464 655 - -
Acco10g2227 664 Pfam Rhamnogalacturonate lyase family 32 226 IPR010325 -
Acco10g2227 664 SUPERFAMILY Starch-binding domain-like 355 452 IPR013784 GO:0030246
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Acco10g2227 Acco-ChrAcco10 34251785 34263806 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2227 29 658 Polysaccharide Lyase AT1G09890 65.931 0.0 874
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2227 10 34251785 34263806 Acco10g2227 10 34251785 34263806 ECH