Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2226 ATGTCGACTCCAGGGGTCCGATGGCACCTTCATGGTCGTCATGTGGTGATGGATAATGGCATACTCCAAGTAACCTTATCAAACCCTGAGGGAATTGTTACTGGGATTCGATATAATGGTGTTGACAATTTGCTTGAGGTCCTTAACAATGAGACTAATCGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATAAAAGGAACATGTTTTAAAGTTATAGTTCAAAATGAGGAACAAGTGGAGCTTTCATTCACACGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTTCCCTTGAATATTGATAAAAGATTTATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAACACTTAGCTGGATGGCCGGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTAATTACATGGCTATAGAAGACAATAGGCAAAGGATTATGCCTCTTCCAGATGATCGGTTATCGGGAAGATGCCAGCCCTTGGCTTACCCAGAAGCTGTCCTACTAGTCAATCCCAAAAATCCACAACTCAAAGGCGAGGTGGATGACAAGTATCAATATTCATCTATTAACATGAATAATCGAGTCCATGGGTGGATATCTTTGAATCCACCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTTAAGCAGAATTTGACCTCACACGTTGGACCTACCACGCTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCCAAATTTCGAGGCGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTCTTTATTTATCTTAACTCCAGATCGATTGGTGATGACCCTCTTTGGCTGTGGGAGGATGCAAAAATACAGATGATGACTGAAGTCCAAAGTTGGCCATATTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTAACGTTAGTGGTAGGCTATTTGTGTTAGACAGGTGCATCTGCACAGATTTGATGCCGGCAAACGGTGCTTTTGTTGGTCTTGCCCTGCCAGGAGAGGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAACATGGATTTTTTACCATTAAGAATGTACGTCCAGGGGACTACAATCTTTATGCTTGGATCCCTGGTTTTGTTGGAGACTTCAGATTTGATGATCTGATGAAGATAGATTCAGGTTCTCGTATTGAACTGGGTGACATTGTGTATGAGCCCCCAAGGGATGGACCCACATTGTGGGAAATAGGCATTCCCGATAGATCAGCTGCAGAATTTTATGTTCCTGATCCAAATCCGAATCTCGTTAATAGGCTCTTTGTCAACCATCCAGACAGGTTCAGGCAGTATGGAATGTGGGACAGGTATACAGAGCTGTATCCAGATGCTGATTTGGTTTACACAGTTGGTGCTAGTGATTATTCCAAAGACTGGTTTTTCGCTCAGGTTCCTAGAAAGAAAGAGGACAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCAGTAATGTTGCTCAGAGAAGTACATATAAACTCAGAGTTGCAATTGCATCTGCAACATTAGCCGAAATGCAGATTCGAATAAATGATCCAAATGCAAAGCGGCCTCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGGCTCTATTGGCTGTACAATGTGAATGTGCCAGGTGCTGCTCTTGTCAATGGCATAAACACACTATTTTTAACGCAGCCAAGATGCCAGAGCCCTTTTCAGGGGATCATGTATGATTATATTCGTTTGGAAGGTATACTTTCACGTAATGAATTTGTCGCGAAAACAGTTATGGCTTGGTTGCCATATGTGCTTAGCTATGCTCTTTGAGTGCAACTGGTTATTGAAGATAGTCATGTGATGATTGAGAATGGCATACTAAAGGTGACCTTGTCAAATCCTGACGGATTAGTCACAGGAATAGAATATAATGGTATCGACAACTTGCTGGAATATCTGAACGAGGAATCTAATAGAGGGTACTGGGACCTTGTGTGGAGCTCACCGGCAAGTCCCGGAACCAAAGGAATGTTTGATGTGATAAAGGGAACAAAGTTCCAAGTGATTGTGGAAAATGAAGAACAAGTTGAATTATCCTTCACAAGAACGTGGGATGCCTCACTTGAAGGCAAGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGCGTCGAGGTTGTTCTGGCTTCTACACCTATGCTATTTACGAACACTTAGATGACTGGCCTGCCTTCGATATGGACGAAACCAGAATTGCTTTCAAGCTCAGCAGAGAAAAGTTTCATTACATGGCAATGGCAGATAATAGACAAAGGAAGATGCCTCTTCCTTGTGACAGAGACTCCCCAAGAGGCCAAAAACTTGCCTATCCTGAGGCTGTTCTTCTGGTTAATCCTGTCGATCCTGAAATGAAAGGAGAGGTGGACGACAAGTACCAATATTCATGCGACAACAAGGATAGCACGGTGCATGGATGGATTTCCACGGAACCAGCGGTCGGATTCTGGCTAATAACTCCCAGCAACGAGTTCCGATCCGGTGGACCCGTCAAACAGAACCTAACTTCTCATGTCGGACCCACCACTCTTGCTGTGTTTCTAAGCCCTCATTATAGCGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGAGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAATGAAGGCAACATATTTAATCAGCTATGGGAAGACGCTAAACTTCAGATAGAAGTTCAGAGTTGGCCCTACAATTTTCCTGCCTCACAAGATCACTTAAAGTGGGACGAACGTGGTAATGTAAATGGTAGGCTACTCCTCCGAGACAGGTATATTAGAGATGATAATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTCCACCAGGAGAAGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGAAGGATATTTCTCCATCAGCAATGTACGCCCTGGTGACTATAATTTATACGCATGGGTCCCTGGTTTTATTGGGGATTATAGATATGATGAGGTTGTGAGCATAACTCCAGGCTGTGACATACTCGTAGGTGATATTGTGCATGAACCTCCAAGAGATGGTCCAACTTTGTGGGAAATAGGCATCCCTGACCGTACAGCTGCTGAGTTTTTTGTTCCCGATCCCGATCCCAAATATATCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATTTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTCAAACTCGACAAAGCGAACAAGAGAGGTTCCTATAAACTGCGCATAGCTCTGGCATCAGCAACATTTTCTGAACTGCAGGTTAGAGTGAATGACCCAAAAGCAGCTCGTCCTGTGTTTTCGAGTGGGTTGATAGGGAGAGATAACTCCATTGCTAGGCATGGCATTCATGGGATGTATGTTCTTTTCACTGTTGACATATTGGGTTCTCGACTCGTTGAAGGAGATAATACCATCTTTTTGACTCAGTCAAGAGCCAGTGGCCCCTTTGTGGGCATTATGTACGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTACTTCCAACGACGATATTTGA 3879 0.4303 MSTPGVRWHLHGRHVVMDNGILQVTLSNPEGIVTGIRYNGVDNLLEVLNNETNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAIEDNRQRIMPLPDDRLSGRCQPLAYPEAVLLVNPKNPQLKGEVDDKYQYSSINMNNRVHGWISLNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFIYLNSRSIGDDPLWLWEDAKIQMMTEVQSWPYFFPASEDFLKSDQRGNVSGRLFVLDRCICTDLMPANGAFVGLALPGEAGSWQRECKDYQFWTRADEHGFFTIKNVRPGDYNLYAWIPGFVGDFRFDDLMKIDSGSRIELGDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNLVNRLFVNHPDRFRQYGMWDRYTELYPDADLVYTVGASDYSKDWFFAQVPRKKEDNTLQGTTWQIKFELSNVAQRSTYKLRVAIASATLAEMQIRINDPNAKRPLFTTGLIGRDNSIARHGIHGLYWLYNVNVPGAALVNGINTLFLTQPRCQSPFQGIMYDYIRLEGILSRNEFVAKTVMAWLPYVLSYALXVQLVIEDSHVMIENGILKVTLSNPDGLVTGIEYNGIDNLLEYLNEESNRGYWDLVWSSPASPGTKGMFDVIKGTKFQVIVENEEQVELSFTRTWDASLEGKLVPLNIDKRFIMRRGCSGFYTYAIYEHLDDWPAFDMDETRIAFKLSREKFHYMAMADNRQRKMPLPCDRDSPRGQKLAYPEAVLLVNPVDPEMKGEVDDKYQYSCDNKDSTVHGWISTEPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSPHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNEGNIFNQLWEDAKLQIEVQSWPYNFPASQDHLKWDERGNVNGRLLLRDRYIRDDNISAKGAYVGLAPPGEVGSWQRECKNYQFWAKADDEGYFSISNVRPGDYNLYAWVPGFIGDYRYDEVVSITPGCDILVGDIVHEPPRDGPTLWEIGIPDRTAAEFFVPDPDPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDKANKRGSYKLRIALASATFSELQVRVNDPKAARPVFSSGLIGRDNSIARHGIHGMYVLFTVDILGSRLVEGDNTIFLTQSRASGPFVGIMYDYIRLEGPPSSTSNDDI 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2226 1292 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 630 - -
Acco10g2226 1292 SUPERFAMILY Starch-binding domain-like 330 411 IPR013784 GO:0030246
Acco10g2226 1292 Pfam Rhamnogalacturonate lyase family 657 853 IPR010325 -
Acco10g2226 1292 Pfam Rhamnogalacturonate lyase family 13 200 IPR010325 -
Acco10g2226 1292 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Acco10g2226 1292 CDD RGL4_N 658 951 - -
Acco10g2226 1292 Gene3D - 657 963 IPR014718 GO:0030246
Acco10g2226 1292 Gene3D - 8 301 IPR014718 GO:0030246
Acco10g2226 1292 Gene3D - 438 629 - -
Acco10g2226 1292 Gene3D - 1090 1281 - -
Acco10g2226 1292 SUPERFAMILY Galactose-binding domain-like 1089 1281 IPR008979 -
Acco10g2226 1292 Gene3D - 328 412 - -
Acco10g2226 1292 Gene3D - 982 1075 - -
Acco10g2226 1292 Pfam Polysaccharide lyase family 4, domain II 1006 1077 IPR029413 -
Acco10g2226 1292 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Acco10g2226 1292 CDD RGL4_C 1094 1281 - -
Acco10g2226 1292 CDD RGL4_C 442 629 - -
Acco10g2226 1292 CDD RGL4_N 6 298 - -
Acco10g2226 1292 SUPERFAMILY Galactose mutarotase-like 13 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Acco10g2226 1292 FunFam Rhamnogalacturonate lyase B 328 427 - -
Acco10g2226 1292 SUPERFAMILY Starch-binding domain-like 1005 1073 IPR013784 GO:0030246
Acco10g2226 1292 CDD RGL4_M 331 430 IPR029413 -
Acco10g2226 1292 SUPERFAMILY Galactose mutarotase-like 662 948 IPR011013 GO:0003824|GO:0005975|GO:0030246
Acco10g2226 1292 CDD RGL4_M 983 1082 IPR029413 -
Acco10g2226 1292 FunFam Rhamnogalacturonate lyase B 980 1079 - -
Acco10g2226 1292 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Acco10g2226 1292 Pfam Polysaccharide lyase family 4, domain III 1092 1280 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2226 Acco-ChrAcco10 34239100 34249760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2226 1 630 Polysaccharide Lyase AT1G09910 70.794 0.0 951