Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2224 ATGGGGAGGGGGAAGATCGTGATAAGGCGAATCGACAATTCGTCGAGCAGGCAGGTGACGTTCTCTAAGCGAAGGAATGGTTTACTAAAGAAGGCGAAGGAGCTAGCAATACTGTGCGACGCTGAGGTCGGAGTAATCATCTTCTCCAGCACTGGAAAACTCTACGATTTCGCCAGCACCAGCATGAAGTCAGTGATTGATCGATACAACAAAAATAAAGAAGATCAACATCCTCATACTGGGAGCTCAACGTCTGAAGTGAAGGTATTTCTAAGCATCTTGTGCATATTGCAACTTCGCCACAGATTAAGTCACACATACTTTTTTGTCATACTAGATGCAAGATAA 348 0.4425 MGRGKIVIRRIDNSSSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFASTSMKSVIDRYNKNKEDQHPHTGSSTSEVKVFLSILCILQLRHRLSHTYFFVILDAR 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2224 115 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Acco10g2224 115 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Acco10g2224 115 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco10g2224 115 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco10g2224 115 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco10g2224 115 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Acco10g2224 115 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 79 - -
Acco10g2224 115 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco10g2224 115 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Acco10g2224 115 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco10g2224 115 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco10g2224 115 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2224 Acco-ChrAcco10 34214347 34223604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2224 1 97 MADS-box Gene Family AT4G37940 73.196 1.37e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco10g2224 SRF-TF 4.5e-26 No_clan