Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2211 ATGGAACTCTGTGAACATGATCATTTTTTGGAAGAATTACTGGCTATGAGAAGGGAAACATGGGACCCCATCCCATCAGAACCAAACCAGCACTTCTCTAATAGCTGGGGTTTTGATTGTTTTGATCAAAACTCCCTGGCTTATCTTCCAAACTCTTCAACCTTTCAAGAAATTCCTCAGAGTTACCACAACAACAACAATTATGCCTTCAATGAAATCTACGGTTCATTACTTGATGAATTCTCTGCTCTTCCCCAGAATGTGGATTCATCTTCTTCATCCTATAACGTTCTTGATACTCCAGTTCTGGGTCAAGAAGATTATCCATTGTCCATGATGGAAGATTTGGAGGATCCTGGTTTGCTTGGGGATGAACTTCAGAGTTTGGACCTGCAAACACCATGCAAGATAGAGCCAAGCCAATCCCCAGAAATGCCAGTTTTCAACATGGGTGATGCTTCTTTGGAGAGAAAGAATCGATCAAAGAAGCTTCAGGGCCAACCCTCCAAGAATTTAATGGCTGAGAGGAGGAGGAGAAAGAGGTTGAATGATCGCCTCTCAATGCTGAGATCAATTGTCCCCAAGATTAGTAAGATGGACAGAACATCTATCCTTGGAGACACTATAGATTACATGAAAGAACTCCTTGAGAAGATTAATAAATTGCAACAAGAATTAGAGATGGATTCAAACATGGGAGGCATTTTCAAGGATGAAACGCAAAATGAACTCTTGGTGAGGAATACACCCAAGTTTGAAGTGAAGAGGAAGAATGAGGATACACAGATTGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTGCAATCTACGATCAACACTTTGGAAGCGTTCGGTCTTGAGATTGAACAGTGTGTCATTAGCTGTTTCAATGACTTCTCTGTCCAGGCTTCTTGCTCAGAGGAAATGGAGCAGAGGAGGGTGCCGAGTTGTGAAGATATAAAGCAAGCTTTATTTAGAAGCGCTGGGTATGGAGGTTCAGCAAGACTGTGCATAAAGGAGAACAAAAATGCAGACACTGCGAGAGGTCACATAATGGAGGTAGGGAACACGGCTAGTAGAGTACCAGTGGGGTTTCCTCTGAGTTTGGGGCTTCTCTTCGCTCTGTTTTTGCTGCTGTGTGGTCTTGTTTGTTGCTGTTTACAGTGGGACAAGTTTCGAGCTTTGCTTCCATGTTCAGGCTGTCTCAACGCTCTTATTGGCCTTGGATCAGATTCAGTTTCTTATCATCCTCCCCTGAAACCAGAACTTCCCTTTCTGGTGATGAAGCAGAAGGAGGTCGAGAGCTTGCCCGTGTTGATGCCTGGAGATGAGGTCCCAAAATTCATAGCTTTGGCCTGTCCATGTCAGCCTCCTAAGGAAGAAAATATCACAATTCAAGTGCAGAAGGACACATGA 1416 0.4357 MELCEHDHFLEELLAMRRETWDPIPSEPNQHFSNSWGFDCFDQNSLAYLPNSSTFQEIPQSYHNNNNYAFNEIYGSLLDEFSALPQNVDSSSSSYNVLDTPVLGQEDYPLSMMEDLEDPGLLGDELQSLDLQTPCKIEPSQSPEMPVFNMGDASLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQELEMDSNMGGIFKDETQNELLVRNTPKFEVKRKNEDTQIEICCAGKPGLLQSTINTLEAFGLEIEQCVISCFNDFSVQASCSEEMEQRRVPSCEDIKQALFRSAGYGGSARLCIKENKNADTARGHIMEVGNTASRVPVGFPLSLGLLFALFLLLCGLVCCCLQWDKFRALLPCSGCLNALIGLGSDSVSYHPPLKPELPFLVMKQKEVESLPVLMPGDEVPKFIALACPCQPPKEENITIQVQKDT 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2211 471 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Acco10g2211 471 Coils Coil 205 232 - -
Acco10g2211 471 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 62 329 - -
Acco10g2211 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 228 IPR036638 GO:0046983
Acco10g2211 471 Gene3D - 156 231 IPR036638 GO:0046983
Acco10g2211 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Acco10g2211 471 SMART finulus 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2211 Acco-ChrAcco10 34123103 34128293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2211 148 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.362 8.85e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco10g2211 HLH 1.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2211 10 34123103 34128293 Acco10g2211 10 34123103 34128293 ECH