Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2209 ATGAATGAGTTCTCCAAGGGGCAATTCCTAGCAAATTCGGAGGGGAATATGATTTTGTCACCTAGACCCTCTCCTAATTTAGGATTGAAAACTAGTTCTGTGCTTGATAAAACGGAAGAAGCAGCACCACCAAAGGTGGAACAAGAGATTCCCCATGTTGTGAACGAAACAAAATCTAATTATAATGTTTCTGCAAATAACAGCAGCACACCTGCTACTAAGGCACAGGTTGTGGGTTGGCCTCCTATTAGATCATTTAGGAAAAATTCATTGGTCACTGCTACGAAAAATACTGAAGAAGTGGATGGAAAAGCACTGTTTGTCAAGGTCAGTATGGATGGTGCTCCATATTTGAGGAAAGTAGACTTGAAGAATTACAGTGCATATCCAGAACTATCTTCTTCTCTGGAGAAGATGTTCAGTTGTTTTACCATAGGTCCATGTGGATCTAACGGAACTCTGAGTAAGGGGATGCTGAATGAAAGCAAGATGAGGGATCTGCTTCGAGGGTCTGAATATGTTCTTACTTATGAGGACAAAGATGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTGTTGATACATGCAGGAGGATGAGGATCATGAAGAGTTCTGAAGCCATAGGCTTAGCTCCCAGGAAGAAATAA 657 0.4201 MNEFSKGQFLANSEGNMILSPRPSPNLGLKTSSVLDKTEEAAPPKVEQEIPHVVNETKSNYNVSANNSSTPATKAQVVGWPPIRSFRKNSLVTATKNTEEVDGKALFVKVSMDGAPYLRKVDLKNYSAYPELSSSLEKMFSCFTIGPCGSNGTLSKGMLNESKMRDLLRGSEYVLTYEDKDGDWMLVGDVPWEMFVDTCRRMRIMKSSEAIGLAPRKK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2209 218 Pfam AUX/IAA family 46 216 IPR033389 -
Acco10g2209 218 ProSiteProfiles PB1 domain profile. 105 207 IPR000270 GO:0005515
Acco10g2209 218 SUPERFAMILY CAD & PB1 domains 100 206 - -
Acco10g2209 218 Gene3D - 99 217 - -
Acco10g2209 218 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 56 212 IPR003311 GO:0005634|GO:0006355
Acco10g2209 218 FunFam Auxin-responsive protein 100 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2209 Acco-ChrAcco10 34111770 34113406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2209 119 209 B3 DNA Binding Superfamily AT1G19220 32.967 3.35e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco10g2209 AUX_IAA 1e-80 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2209 10 34111770 34113406 Acco10g2209 10 34111770 34113406 ECH