Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2196 ATGGATCGTAAAACCATATTCTTTCTTGTTCTTATTGTCTCCATGTCTTGTATTCCACTGGTCTTCAGTGTTAAGACCAATCAGTCACAATTTTTTGTTTTCATGAAGGAGTCTTTCTCCGGTAAGTTCCCCTCCAGTTGGGATGTTGCCGGAGGAAAACCTGTTTGCACCTTCACTGGGGTTGCCTGCAACGACCGAGGAGACGTCGTCAGTCTTGACGTCTCCGGTTGGTCACTCTCCGGGGACTTGCCTGAAAATATATGCTCTTATTACTTGCCGGAGTTACGTGTTCTTCGTCTCAGCAATAACCGCCTGAAGAAAAACTTGTTTCCTGACTCCATACTCAACTGTTCCCACTTGGAAGAGCTTAACATGAGTTCCATGCTTCTTTCTGGGAAGCTTTCTGATTTCTCGCCTCTTCAGAGATCTCTCAAGGTTCTTGATTTGTCGTATAACGTTTTCACGGGTCGGTTTCCCATGTCTGTGTTCAATCTCTCCAGTCTCGAAGTCCTTAACTTCAACGAAAATGAAGGCTTCCACTTCTGGACGCTTCCAAAGGATGTTCACAACCTCATTAATCTCAAGTCTATGGTGCTTACAACATGCATGTTACAAGGCCAAATTCCAGCTTCCTTAGGAAACCTCACGTCTCTTGTTGATCTTGAGTTGAGTGGAAACTTCCTCACTGGTCAGATTCCTCCAGAGCTTGGAATGCTGAAAAATTTGCAATATCTTGAGCTTTACTATAACAGTCTTGTTGGTTCTATACCCGAGGAGCTAGGAAATCTCATGGAGCTCAAAGACTTTGATTTGTCGGTCAACAAGTTGACCGGGAAAATTCCAGAATCTATATGTCGCCTTCCCAAGCTTGAAGTCATACAGCTTTACAACAATAGCCTCACAGGTGAAATTCCAGCTGTGATTGCGAACTCAACAACCTTGAGAATATTGTCTGTTTATGACAATTTCCTGAGTGGTCATGTCCCAAGAAATCTGGGTCAGTTCTCAGAATTGCTAGTTTTAGACATGTCAGAAAACCAATTATCTGGTCCTTTGCCAACAGAGGTTTGCAGGGGAGGTAAACTGCTCTATTTTCTTGTTCTGGATAATCAGTTTTCTGGAGAGTTATCTGAAGTTTATGCAAAATGCTTGACTCTTTTGAGGTTCAGAGTGAGTAGTAACCACTTGCAGGGCCCCGTTCCTAAGGATATCTTTGGCTTGCCACATGTTTCAATAATTGATTTGGGATACAACAATTTTTCTGGTTCCATTTCTGAGTCCATTGGAAATTCAAGAAACTTGTCAGAGCTTTTCCTACAGAAGAATCGAATTTCTGGTTCAATTCCTCCTACCATCTCTCGTGCTAGCAATCTGGTCAAGATTGATCTCAGTTACAACCTTTTGTCTGGTCCAATACCGTCAGGAATTGGAAACCTGAAGAGGCTTAATTCACTGATGCTGCAAGGAAACAAGCTAAGTTCTTCCATTCCCAGCTCACTTTCCTTGCTACAGTCCCTCAACGTTCTTGATCTCTCCCACAACCTCTTGAGTGGGACCATCTCTGATAATTTATCTGCACTCTTACCCAATTATATCAATTTCTCAAACAATTTGCTTTCTGGTCCAATTCCTTCCTCATTGATGAAAGGGGGGCTATTAGAAAACTTTTCAGGGAATTCTGGTCTCTGTGTGTTGCCGGTTTATGCTAACTCATCATACCAGAATTTCCCTGTGTGTTATCAAAGTAGGAGCAGAAAAAGGTCAAGTGTCATATGGGTAGGTGCAGTTGCAGTAGCTTTGGTCATCATTGTATTTGGAGCTGTATTGGCTTTTATAAGGCGTAGGCCAACCAAAGATAAGTCAACCAAGGGACAAGATGATGAGTCACTATCTTCTTCATTCTTCTCCTATGACCTGAAGAGCTTCCACAAGTTAAATTATGATCGGCAGGAGATCACTGAGGCCATGGTGGACAAGAATATAGTGGGATACGGTGGATCAGGGACAGTGTACAAGATTGAGTTGAAGAGTGGTGAAATTGTTGCAGTCAAGAAGCTATGGAGTCGAACATCAAAGGATTCAGCTCAAGAGGATCGCATGGGGTTGGACAAGGAGTTGAAAAATGAGGTGGCGACCTTAGGAAATATAAGACACAAGAACATAGTTAAACTGTACAGCTACTTCACTAGCTTGGACTTCAGTTTGTTGGTTTATGAGTACATGCCAAATGGTAATCTCTGGGATGCCCTGCACAAAAGCTGGATCAACTTGACTTGGCCTACACGTCATCAGATCGCGCTAGGGGTAGCACAAGGCTTAGCATATCTCCACCATGATCTGCTTCCTCCAATTATTCACAGAGACATAAAGTCTACAAACATCCTTCTGGATGCTCATTACCAGCCCAAGGTTGCAGATTTCGGAATCGCCAAGGTTTTACAAGCAAGGGGAGGCAAAGATTCCACCACAACTGTTGTTGCAGGAACCTATGGTTACTTAGCTCCAGAATATGCATATTCATCAAGAGCAACAACCAAGTGTGATGTCTACAGTTTTGGCGTAATCCTTATGGAACTGATAACTGGGAAGAAGCCTGTGGAGGCAGAGTTTGGAGAGAACAGGAATATTGTATATTGGGTTTCAAACAAAGTAGACAGCAGAGAAGGGATTAATGAAATAATAGACAAGAGATTATCAGGTTTATTCAGGGAGGAGATAATACAAGTGATCCGAATTGCCATCAAGTGCACCTACAAATCTCCTGCTAATAGACCAACCATGAAAGATGTGGTTCAGCGACTCATTGAAGCAGACCCATGCAAATACGATTCTGGCAAGTTGTCAGACAAGACCAGTACCAAATAA 2865 0.4272 MDRKTIFFLVLIVSMSCIPLVFSVKTNQSQFFVFMKESFSGKFPSSWDVAGGKPVCTFTGVACNDRGDVVSLDVSGWSLSGDLPENICSYYLPELRVLRLSNNRLKKNLFPDSILNCSHLEELNMSSMLLSGKLSDFSPLQRSLKVLDLSYNVFTGRFPMSVFNLSSLEVLNFNENEGFHFWTLPKDVHNLINLKSMVLTTCMLQGQIPASLGNLTSLVDLELSGNFLTGQIPPELGMLKNLQYLELYYNSLVGSIPEELGNLMELKDFDLSVNKLTGKIPESICRLPKLEVIQLYNNSLTGEIPAVIANSTTLRILSVYDNFLSGHVPRNLGQFSELLVLDMSENQLSGPLPTEVCRGGKLLYFLVLDNQFSGELSEVYAKCLTLLRFRVSSNHLQGPVPKDIFGLPHVSIIDLGYNNFSGSISESIGNSRNLSELFLQKNRISGSIPPTISRASNLVKIDLSYNLLSGPIPSGIGNLKRLNSLMLQGNKLSSSIPSSLSLLQSLNVLDLSHNLLSGTISDNLSALLPNYINFSNNLLSGPIPSSLMKGGLLENFSGNSGLCVLPVYANSSYQNFPVCYQSRSRKRSSVIWVGAVAVALVIIVFGAVLAFIRRRPTKDKSTKGQDDESLSSSFFSYDLKSFHKLNYDRQEITEAMVDKNIVGYGGSGTVYKIELKSGEIVAVKKLWSRTSKDSAQEDRMGLDKELKNEVATLGNIRHKNIVKLYSYFTSLDFSLLVYEYMPNGNLWDALHKSWINLTWPTRHQIALGVAQGLAYLHHDLLPPIIHRDIKSTNILLDAHYQPKVADFGIAKVLQARGGKDSTTTVVAGTYGYLAPEYAYSSRATTKCDVYSFGVILMELITGKKPVEAEFGENRNIVYWVSNKVDSREGINEIIDKRLSGLFREEIIQVIRIAIKCTYKSPANRPTMKDVVQRLIEADPCKYDSGKLSDKTSTK 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2196 954 FunFam receptor protein-tyrosine kinase CEPR1 639 740 - -
Acco10g2196 954 SUPERFAMILY Protein kinase-like (PK-like) 645 934 IPR011009 -
Acco10g2196 954 Gene3D Ribonuclease Inhibitor 27 180 IPR032675 -
Acco10g2196 954 SMART serkin_6 656 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g2196 954 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 218 - -
Acco10g2196 954 Pfam Protein kinase domain 658 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g2196 954 Gene3D Phosphorylase Kinase; domain 1 639 740 - -
Acco10g2196 954 ProSiteProfiles Protein kinase domain profile. 656 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g2196 954 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Acco10g2196 954 Gene3D Ribonuclease Inhibitor 181 305 IPR032675 -
Acco10g2196 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Acco10g2196 954 Pfam Leucine rich repeat 432 492 IPR001611 GO:0005515
Acco10g2196 954 Gene3D Transferase(Phosphotransferase) domain 1 741 948 - -
Acco10g2196 954 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 741 952 - -
Acco10g2196 954 PRINTS Leucine-rich repeat signature 338 351 - -
Acco10g2196 954 PRINTS Leucine-rich repeat signature 503 516 - -
Acco10g2196 954 SUPERFAMILY L domain-like 68 353 - -
Acco10g2196 954 SUPERFAMILY L domain-like 280 567 - -
Acco10g2196 954 FunFam Leucine-rich repeat receptor-like protein kinase 181 283 - -
Acco10g2196 954 ProSitePatterns Protein kinases ATP-binding region signature. 662 685 IPR017441 GO:0005524
Acco10g2196 954 SMART LRR_typ_2 215 238 IPR003591 -
Acco10g2196 954 SMART LRR_typ_2 503 527 IPR003591 -
Acco10g2196 954 SMART LRR_typ_2 479 502 IPR003591 -
Acco10g2196 954 SMART LRR_typ_2 239 263 IPR003591 -
Acco10g2196 954 SMART LRR_typ_2 287 311 IPR003591 -
Acco10g2196 954 SMART LRR_typ_2 92 117 IPR003591 -
Acco10g2196 954 SMART LRR_typ_2 335 359 IPR003591 -
Acco10g2196 954 Gene3D Ribonuclease Inhibitor 308 573 IPR032675 -
Acco10g2196 954 FunFam Receptor protein-tyrosine kinase CEPR1 287 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2196 Acco-ChrAcco10 34010567 34013593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2196 28 939 Receptor kinase-like Gene Family AT5G49660 63.934 0.0 1169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco10g2196 Pkinase 9.4e-50 CL0016