Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2164 ATGCAACCTCCCCACTTGTTGCAGAATAACAACATGGCCTCCGCCGCCGATTCCTTTGTCGTCGAAGACCTTCTTGACTTCCCCAATGACGACGAACCTCTCCTCCTCAACGACGCTTCCCTTCATTCATTCCCCGGCCACTCCACCAATTCTTTCCCCCTCACCGCCACCGCCGCTACCTCCATGGGCTCCCACTCTAATAATGCCGTCGCCGATAATATTGGCTCCCGCAGTTTCCAAGACCTTCACTTTTCTGTCGACCTCTGCGTCCCCTTGCCGTATGATGATGACATGGCCGAGTTGGAATGGCTTTCAAACGCAGTGGAGGAATCATTTTCGAGCGAGGACCTGCAGAAGCTGCAGTTGATATCGGGGATGAAGGCCCGAAACGACGTCGCGGAAGCATCCGATACTCACGAATTACAGGCCGAAGCCAACCGAAGCGTCAACAACAACAACCCCATTTTCAACTCCGACGTCTCGGTTCCGGCCAAAGCTCGCAGCAAGCGCTCACGTGGCTCTCCATGCAACTGGACTTCTCGCCACCTCCTCCTTTCTCCATCTCAATCTTCAACGCCATCGCTATCCTCCGCGTCATCTTCCTTAGACCGCGACACCGTCCCCATCCATTCCACCGGAAAGAAACTAGGGAAGGCAGCGTCAAGGCGGAAAGACAGCGGCGAGGGTCGTAAGTGCCTGCATTGTGCTACAGATAAGACACCGCAGTGGCGGACGGGACCCATGGGCCCCAAGACGCTTTGCAACGCGTGCGGAGTAAGGTACAAGTCAGGGAGGCTGGTGCCAGAGTACCGGCCGGCAGCAAGCCCGACGTTCGTACGGTCGAAGCATTCAAACTCTCACCGGAAGGTGATGGAGCTCCGGCGTCAGAAGGATGTGCAGCAGCAGCATCTACATCATCAGTTCCTGCAACATGCCAATATGATGTTGGAGTTTCATGTGTCCAATGGGGACGATTACCTGATCCACCAACACCTCGGCTCTGACTTCAGGCAGCTCATTTAG 1023 0.5552 MQPPHLLQNNNMASAADSFVVEDLLDFPNDDEPLLLNDASLHSFPGHSTNSFPLTATAATSMGSHSNNAVADNIGSRSFQDLHFSVDLCVPLPYDDDMAELEWLSNAVEESFSSEDLQKLQLISGMKARNDVAEASDTHELQAEANRSVNNNNPIFNSDVSVPAKARSKRSRGSPCNWTSRHLLLSPSQSSTPSLSSASSSLDRDTVPIHSTGKKLGKAASRRKDSGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVRSKHSNSHRKVMELRRQKDVQQQHLHHQFLQHANMMLEFHVSNGDDYLIHQHLGSDFRQLI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2164 340 MobiDBLite consensus disorder prediction 172 207 - -
Acco10g2164 340 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355|GO:0043565
Acco10g2164 340 Gene3D - 225 276 IPR013088 GO:0006355|GO:0008270
Acco10g2164 340 MobiDBLite consensus disorder prediction 144 159 - -
Acco10g2164 340 PANTHER GATA TRANSCRIPTION FACTOR 8 303 - -
Acco10g2164 340 ProSiteProfiles GATA-type zinc finger domain profile. 226 262 IPR000679 GO:0006355|GO:0043565
Acco10g2164 340 Pfam GATA zinc finger 232 265 IPR000679 GO:0006355|GO:0043565
Acco10g2164 340 PIRSF Txn_fac_GATA_plant 4 321 IPR016679 GO:0003677|GO:0005634|GO:0045893
Acco10g2164 340 FunFam GATA transcription factor 222 307 - -
Acco10g2164 340 MobiDBLite consensus disorder prediction 144 231 - -
Acco10g2164 340 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 228 290 - -
Acco10g2164 340 CDD ZnF_GATA 231 278 IPR000679 GO:0006355|GO:0043565
Acco10g2164 340 SMART GATA_3 226 276 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2164 Acco-ChrAcco10 33760626 33762012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2164 84 340 C2C2-Gata Transcription Factor Family AT5G25830 55.636 2.05e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco10g2164 GATA 3.1e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2164 10 33760626 33762012 Acco10g2164 10 33760626 33762012 ECH