Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2087 ATGAATCCCACTTTACTGACTCGCCATGAGGTTCTTGGAGTAAGGACGTCGGAGTCGAATCGAAGCCGTCCACCTTTGACTCTTCTCATCCATGCCTCAACCCATGGGACGCCTTTTCTCAGCAAGATTTACTCTTCTATAATTGCTGAGAATGGTTCATGTGTGAAAAGTAAATCTTTGAGGTCTCCAACCCAATCCTCTTTAAATGGAAAGGAAACAGTTGGAAGATCCTGTAGAACCTTCTCAGGAACTAGTAATCCAAGGAAGTCCCTTAAAGAGCCTCAGCAACGAACACTACCCTCTAGGTTAGAGACAGATTCATCTGATACGAGCAGCATACAGGATGAACCGGAAGTGTCAGTTCGCATCCCTTCTTCGTCTGCAAGTCATCAAAGTGAGCTTCAAGCTGAACAAGCACTAGTGGAAGTGGCAAGCACTAGTGGTGTTTCAAGAACAAAATCAAGGAGAAGTTTTCGTCAACCTGGATCGCGTGGTCAAGAAGCTAAAAGCACTGGTTCAGTGACATGTGCTGGTACCAACCGATATGTCAAGTGTAACTCTATAAATGATGCCAGCTCCACAGATTGTTCTTCTTCGGATTCAACCATAAATAGAAGGAAGGATATGGTGAAGAGAAGAAATTATGAAAGGGAAAGTAGTTCCTCTGCCAGAGGGAAGAAGTTGAGTGGGTCTTTATTGGAAGGACAGAGTTCTAGTTCTGTAAGTGGCATATCTATTTCTGGTCCAAGAAGATCAAGAAATGTTCATGCTCACGCGGACAACATGGCATCAGTTAGAACTCGAAGGTCTATGAGTGGTACTGCTGGGGAAGGGCTTCCAAGACGTGGAAATGCACGCCCTATGCAGCCCAATGAACCCCTTGCTTTGTTGCCACCTATGCCTCATGAACTTTCTTTTCCACATCATGCTTCTGTGGAGTCTCCTTTAATTCGATTGAGCTTGCCTAGTAGACCAGGTTCAAGCAACGGGCGACCTTCATCTCCTTCAGAATCTGACACGACTCGTCCTCTAATAAATCGGAGTACAAGACGGTACCGAAACAGTATTGCTGAGGTATTATTAGAACTTGAGAGGATTGAACAAGATGAAGAGCTGACAGAGGAGGAAATTCGTTTACTGGAGACAAATTTCCTCCTTAACGGACTATACTTGTATGATCAGCATAGGGACATGCGTATGGATATTGATAATATGTCATATGAGGAACTATTAGCCCTGGAAGAAAGGATGGGTACTGTGAGCACAGCTTTAACAGAGGAAGCACTGTCAGAATGTCTTAAGAGAAGCATCTTTCAGCCTACAACTTCAGATGGCGACGATGAGGAGATTAGCAAAAATACCATTAATGATGTTATCAAATGCAGCATCTGCCAGGATGAATATGTGGTTGGAGATGAATTGGGGGGTCTGAAATGTGAGCATAGATATCATGTAGCTTGCATACAACAGTGGCTTCGCCTCAAGAATTGGTGTCCTATCTGCAAAGCATCAGCAGCACCTTCAAATTCATCTGTTGCTTCTAATCAGGCCTGA 1554 0.4408 MNPTLLTRHEVLGVRTSESNRSRPPLTLLIHASTHGTPFLSKIYSSIIAENGSCVKSKSLRSPTQSSLNGKETVGRSCRTFSGTSNPRKSLKEPQQRTLPSRLETDSSDTSSIQDEPEVSVRIPSSSASHQSELQAEQALVEVASTSGVSRTKSRRSFRQPGSRGQEAKSTGSVTCAGTNRYVKCNSINDASSTDCSSSDSTINRRKDMVKRRNYERESSSSARGKKLSGSLLEGQSSSSVSGISISGPRRSRNVHAHADNMASVRTRRSMSGTAGEGLPRRGNARPMQPNEPLALLPPMPHELSFPHHASVESPLIRLSLPSRPGSSNGRPSSPSESDTTRPLINRSTRRYRNSIAEVLLELERIEQDEELTEEEIRLLETNFLLNGLYLYDQHRDMRMDIDNMSYEELLALEERMGTVSTALTEEALSECLKRSIFQPTTSDGDDEEISKNTINDVIKCSICQDEYVVGDELGGLKCEHRYHVACIQQWLRLKNWCPICKASAAPSNSSVASNQA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2087 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 75 506 IPR045191 GO:0061630
Acco10g2087 517 FunFam E3 ubiquitin-protein ligase arkadia 421 507 - -
Acco10g2087 517 MobiDBLite consensus disorder prediction 57 172 - -
Acco10g2087 517 MobiDBLite consensus disorder prediction 1 22 - -
Acco10g2087 517 SUPERFAMILY RING/U-box 460 506 - -
Acco10g2087 517 MobiDBLite consensus disorder prediction 224 249 - -
Acco10g2087 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 516 IPR013083 -
Acco10g2087 517 ProSiteProfiles Zinc finger RING-type profile. 461 502 IPR001841 -
Acco10g2087 517 Coils Coil 349 383 - -
Acco10g2087 517 Pfam Ring finger domain 460 502 IPR001841 -
Acco10g2087 517 MobiDBLite consensus disorder prediction 188 307 - -
Acco10g2087 517 MobiDBLite consensus disorder prediction 319 349 - -
Acco10g2087 517 MobiDBLite consensus disorder prediction 201 223 - -
Acco10g2087 517 MobiDBLite consensus disorder prediction 321 349 - -
Acco10g2087 517 SMART ring_2 461 501 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2087 Acco-ChrAcco10 33162334 33166684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2087 356 505 C3H Transcription Factor Family AT2G15530 43.333 8.29e-35 137