Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2079 ATGCCAAGTTTGACATGTAATGCTTGCAACAAAGAATTCAGCGACGATGCCGAGCAAAAGCTTCATTACAAATCCGAGTGGCACCGATACAATCTCAAGCGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCATTGTTCATGGCTAGACAATCTGCAGCTACTCAAGAGAAAGATAAAAATGAAACTCCCATGCTCTATAGTTGTGGCCTTTGTGGAAAAAGTTATAAAAGTTCTAAGGCTCATGCCGAGCATCTGAAATCCCGTGGTCATTTGATGCGGGCATCTCAAGGAAGTAATCATTCAGATGACCAGGCAATAGTCAAGCCACTACCACAACGTGTAGTGAATAGACCTCCTCCCAGAAGAGATGTAGACAATGATGAAAGTGAAGATGAATGGGAGGAGGTCAATTCTGAGGATCCTTTGATTAATGAAGCTTCGATGTCCTTGACTGAGTTGAATGTTAATGAGCATGATACCCATGTTGATATGGACGAAGATGAGGATGATGATTATGGGGATTTGGATCCATCATGTTGTTTTATGTGTGATCAAAAGCATGATACTATAGAAAGTTGCATTGTTCACCTGCACAAGCAGCATGGATTCTTCATTCCAGATGTTGAGTATTTAAAGGATCCCAAAGGCCTGCTCACCTATCTAGGCCTTAAGGTCATGAGGGATTATATGTGCCTTTACTGCAATGATAGATGCCATCCTTTCAGCAGCCTGGAAGCTGTTAGGAAACACATGGCTGCCAAAAGTCACTGTAAAGTGCATTATGGTGATGACAACGAAGACGAAGAAGCAGAGTTGGAAGAGTTCTATGATTATAGCAGCAGTTTTGTGGATGAGCAAGGGAAGCAAATAGTTGCATCAGGTGAGTCAGCCAGGAAAGTAGAACTTGGATCGGAGCTTGTAATCACAGAGAAATCAAATGATGGAATATCAACTAAAAAACTTGGTTCTCGTCAATACTTGCGTTATTATCGACAAAACCCCCGCCCATCCCCCACAAATAACATGGCTGTTGCCGCTGCATTGGCCTCAAGGTACAGGAGCATGGGTTTGGCAACTGTGCAATCAAAGCAGCATATGGTGAGGCTGAAAGTGCTGAAGGAAATGAATAGGTCTGGTGTGGAAATCATGCGTTCTAAAATAGCCATGAAGAGTAACGTCATCAGGAACTTGCCAAAGAATGTGCCATATTAG 1215 0.4321 MPSLTCNACNKEFSDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFMARQSAATQEKDKNETPMLYSCGLCGKSYKSSKAHAEHLKSRGHLMRASQGSNHSDDQAIVKPLPQRVVNRPPPRRDVDNDESEDEWEEVNSEDPLINEASMSLTELNVNEHDTHVDMDEDEDDDYGDLDPSCCFMCDQKHDTIESCIVHLHKQHGFFIPDVEYLKDPKGLLTYLGLKVMRDYMCLYCNDRCHPFSSLEAVRKHMAAKSHCKVHYGDDNEDEEAELEEFYDYSSSFVDEQGKQIVASGESARKVELGSELVITEKSNDGISTKKLGSRQYLRYYRQNPRPSPTNNMAVAAALASRYRSMGLATVQSKQHMVRLKVLKEMNRSGVEIMRSKIAMKSNVIRNLPKNVPY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2079 404 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Acco10g2079 404 Gene3D Classic Zinc Finger 3 89 - -
Acco10g2079 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 96 IPR013087 -
Acco10g2079 404 MobiDBLite consensus disorder prediction 83 141 - -
Acco10g2079 404 Pfam C2H2 type zinc-finger (2 copies) 181 281 IPR041661 -
Acco10g2079 404 SUPERFAMILY beta-beta-alpha zinc fingers 166 240 IPR036236 -
Acco10g2079 404 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
Acco10g2079 404 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Acco10g2079 404 SMART c2h2final6 4 28 IPR013087 -
Acco10g2079 404 SMART c2h2final6 230 257 IPR013087 -
Acco10g2079 404 SMART c2h2final6 67 91 IPR013087 -
Acco10g2079 404 SMART c2h2final6 179 202 IPR013087 -
Acco10g2079 404 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
Acco10g2079 404 PANTHER ZINC FINGER PROTEIN 622 3 403 IPR040025 -
Acco10g2079 404 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2079 1 404 C2H2 Transcription Factor Family AT4G31420 64.477 1.28e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco10g2079 zf-C2H2_2 4.9e-25 CL0361