Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2047 ATGATCCTGTTAATCTTGCTGTTGGTCTTGGATTCTTTCAGTGCGGGATCTTTCTTGGACGTGATGAAAGAAGCAGCATTTGCTTTATCTAAGTTTGGAAGACAAGGTGTATTTATACATGGTTTACACGACACTTTCCCATTGTCGATGGAGAATTCTGGGCCCTTGAACGGCACTCAGTTCGTTATTGACATAGCTGGAAGTGGTGAAGCTTCCACATCTACCTCTCCACATGATAGACATTTTAACGGCGGACGTACATCACAACATGAAGACAGACCTAGTAGTGCAAGGTTACCAGCTTCTCTGCCTTCAGTTTCTGCTGCTTCTAGTGGTGCAAATTCCAGGATTCCTTCAGTTGTAAGACGGGGGGACACCCGTCGGCATAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCACAGTAAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCAAGGCATGAGCATCCACGCAATCCACTGCGTGCATGGATTGTTGGTTATGCATCAGGATGCTTTGCTACTATCCCCTTGCTTGGTTGGAGGTATTATCATCATAACCCGAGTGGAGAGCAAAATTCATCTCAACCACGTCAAGCTTCCCCTCGAGTTAATGTTTCTTCAAGGACACTTCTTTCTGTTTCAAGAAATAATGGGGGAGAAGACAATCAGGCTGCTGTTTCTTCCTCTAGAAGCAGTCTTGTTTCAATAATGATGAATCCAAGACTAAAGTCGCTAGTGGAATATTTCAAAATAGCCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATCTTTGGTGGAAACTCGTCTGCTGGTGACGCTCCTAATATGTATAGGTTATGTATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCCTTCATTCTATGTGCAACAATCTGCTGTTGTCTGCCCTGTATAATTTCCATTCTTGGGGTTAGAGAGGATCTGGCACAAACAAGAGGGGCAACCTCTGAATCTATTAGTGCCCTGCCAACGTACAAGTTCAAGGTGAAGAAACGTAAAAACAGCGATAAAAACAGTGATGAAAGCAGCTCAAATATTTCTGAAGGTGGAATTGTTGCTGCTGGAACTGAAAAGGAGCGTGCAATCTCTGGAGAAGACGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCAATGCTCCCATCTTTTTCACAAAGATTGTGTAGACAAGTGGCTCAAGATTAATGCATCATGCCCTCTTTGCAAAAGTGATGTTGGTGGGAACCTAATAGGATCAGTCTCTGGTGAAGGTTCCAACCAACCAAGGGGTGAGAGCAGAGTTGGAGTTGGCCCGATCAATAGCATAGTATAA 1407 0.4343 MILLILLLVLDSFSAGSFLDVMKEAAFALSKFGRQGVFIHGLHDTFPLSMENSGPLNGTQFVIDIAGSGEASTSTSPHDRHFNGGRTSQHEDRPSSARLPASLPSVSAASSGANSRIPSVVRRGDTRRHRSPLNSGLWISIELVLTVSQIVASIIVLSLSRHEHPRNPLRAWIVGYASGCFATIPLLGWRYYHHNPSGEQNSSQPRQASPRVNVSSRTLLSVSRNNGGEDNQAAVSSSRSSLVSIMMNPRLKSLVEYFKIALDCFFAVWFVVGNVWIFGGNSSAGDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLAQTRGATSESISALPTYKFKVKKRKNSDKNSDESSSNISEGGIVAAGTEKERAISGEDAVCCICLAKYENNDELRELQCSHLFHKDCVDKWLKINASCPLCKSDVGGNLIGSVSGEGSNQPRGESRVGVGPINSIV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2047 468 CDD RING-H2_EL5-like 393 433 - -
Acco10g2047 468 SMART ring_2 393 433 IPR001841 -
Acco10g2047 468 SUPERFAMILY RING/U-box 386 437 - -
Acco10g2047 468 MobiDBLite consensus disorder prediction 100 117 - -
Acco10g2047 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 439 IPR013083 -
Acco10g2047 468 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 59 437 - -
Acco10g2047 468 ProSiteProfiles Zinc finger RING-type profile. 393 434 IPR001841 -
Acco10g2047 468 MobiDBLite consensus disorder prediction 69 131 - -
Acco10g2047 468 MobiDBLite consensus disorder prediction 445 468 - -
Acco10g2047 468 Pfam Ring finger domain 393 434 IPR001841 -
Acco10g2047 468 FunFam E3 ubiquitin-protein ligase 376 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2047 Acco-ChrAcco10 32895386 32899374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2047 118 438 C3H Transcription Factor Family AT1G80400 58.282 2.32e-136 397