Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2028 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTATATCCATGATTACCTGGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTGTCTTCGGATCCCGTTGCTATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCGGTATTCTGGGATATATTTATTGCCAGGACTAATGAGAAGCACTCAGAAGTTGCAGCATCTTATATTGAGACCCAGTCAATCAAGACAAGAGAACAACAGCAGCAGCAACAGCCTCAGCAACAGGCACCACCGTCACAACATCAGCAACAACAGCAGCAGCACATGCAGATGCAGCAATTGCTGTTACAAAGGCATGCGCAGCAGCAGCAGCATCAACAGCAGCAGCAGCAGCCACCGCTGCCGTCACAACCTCTGCAGCAGCAGCAGCCACCTCCGCAACAGCAGCAGAGAAGGGATGGGGCTCATCTGTTAAATGGCAGTACAAATGGGTTAGTTGGAAATCCTAGCACTGCAAATGCCATGGCCACAAAGATGTATGAAGAGAGATTAAAACCTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCGTGAAGCAAAGATTTGGTGACAACATGGGCCAACTCTTGGACCCTAATCATGCCTCAATAATGAAATCAGCTGCAGCTTCTGGCCAGTCTTCAGGACAAGTTTTGCATGGTGCTGCCAGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTGCCAGGGTCTACTCCAGATGTAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCAGGTCTTGAAGGATCATTAATGGGAATTCCTGGATCAAATCAAGGCAGCAACAATTTGACTCTGAAAGGATGGCCACTCACAGACCTCGAACAACTGCGCTCTGGTATTCTTCATCAACCAAAGCCTTTTATACAGGCTCCTCAACCCCTTCATCAACTGCAAGTTTTGACACCTCACCATCAACAGCAGCTTATGCTTGCCCAGCAAAATTTGTCATCCCCATCTGCCAATGAGGAGCATAGAAAACTGAGAATGCTACTGAATCAAAGGAATATGGGCCTAAATAAGGATGGCCTTTCAAATTCTGTTGACGTGGTTCCAAATGTTGGGTCACCTCTTCAAGCTGGTGGCCCTCTTTTGCCCCGTGGTGATACAGATATGCTAGTGAAGTTAAAATTGGCTCAAATACAGCAACACCAACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTTTCAAATCAGCAGCCTCAAACTTCAAACCATAATATGCATCAGCTTGATAAAGTGGGCGGCGGTGGCAGCATCACCATGGATGGAAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAAGTTCTGCACCCTCAACTCCCTCAACTCATACACCTGGAGATGTGATATCCATGCCTGCTTTGCCTCATAGCGGCAGTTCTTCAAAGCCTTTAATGATGTTTGGTACTGATGGTACTGGAACTCTCACATCTCCTTCAAACCAGTTGGTCGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCGCCTTCACATTTTCTGAAGTAAGTTCTGTACAAGCAAGCACAAACAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGTCATGACAAGAAGGCTGTGTTATGGCACACAGATTCATTAAAGCAAAAGGCCACTTTAGAAGAACATTCATCTATGATCACTGATGTCCGTTTCAGTCCGAGCATGCCTCGTCTTGCAACATCTTCATTTGATAAAACTGTTAGGGTTTGGGATGTCGACAATCCAGGATATACAATTCGCACCTTTACAGGACATTCTGCATCTGTTATGTCATTAGATTTTCACCCAAATAAGGATGATCTGATCTGCTCCTGTGACGGTGATGGTGAGATACGATATTGGAGTATTAACAATGGTAGCTGTACTAGAGTCTCAAAGGGCGGCACTGCTCAGATGAGATTTCAACCTCGTATGGGGAGGTACCTTGCTGCAGCCTCAGAGAATGTTGTCTCTGTGTTTGATGTGGAGACACATACATGCAGATATTCATTACAGGGACATACAAAGGCAATACATTCTGTTTGCTGGGACCCTAGTGGGGAATTATTGGCATCTGTGAGTGAGGACTCGGTCAGGGTTTGGACTCTCGGGGCAGGAAGTGAAGGAGAATGTGTTCACGAGCTAAGCTGTAACGGCAATAAGTTCCACTCCTGTGTTTTCCACCCAACTTATTCTGACTTGCTGGTCATTGGGTGTTACCAGTCTTTAGAGCTTTGGAATACAGCGGAGAACAAGACAATGACTGTTTCTGCCCATGAAGGTCTCATTGCTGCCTTGGCAGTGTCTCCGTTGACTGGTTTGGTTGCTTCAGCTAGCCATGACAAGTTCGTCAAGCTCTGGAAATAA 2658 0.4575 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQSIKTREQQQQQQPQQQAPPSQHQQQQQQHMQMQQLLLQRHAQQQQHQQQQQQPPLPSQPLQQQQPPPQQQQRRDGAHLLNGSTNGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAVKQRFGDNMGQLLDPNHASIMKSAAASGQSSGQVLHGAASGMSQQVQARSQQLPGSTPDVKSEINPVLNSRAAGLEGSLMGIPGSNQGSNNLTLKGWPLTDLEQLRSGILHQPKPFIQAPQPLHQLQVLTPHHQQQLMLAQQNLSSPSANEEHRKLRMLLNQRNMGLNKDGLSNSVDVVPNVGSPLQAGGPLLPRGDTDMLVKLKLAQIQQHQQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKVGGGGSITMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGTGTLTSPSNQLVDMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGAFTFSEVSSVQASTNKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVSKGGTAQMRFQPRMGRYLAAASENVVSVFDVETHTCRYSLQGHTKAIHSVCWDPSGELLASVSEDSVRVWTLGAGSEGECVHELSCNGNKFHSCVFHPTYSDLLVIGCYQSLELWNTAENKTMTVSAHEGLIAALAVSPLTGLVASASHDKFVKLWK 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2028 885 FunFam Transcriptional corepressor LEUNIG 729 885 - -
Acco10g2028 885 MobiDBLite consensus disorder prediction 411 548 - -
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 728 IPR001680 GO:0005515
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 643 678 - -
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 853 885 - -
Acco10g2028 885 MobiDBLite consensus disorder prediction 455 515 - -
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 853 885 IPR001680 GO:0005515
Acco10g2028 885 MobiDBLite consensus disorder prediction 411 444 - -
Acco10g2028 885 Gene3D - 734 885 IPR015943 GO:0005515
Acco10g2028 885 Gene3D - 578 733 IPR015943 GO:0005515
Acco10g2028 885 SMART WD40_4 722 758 IPR001680 GO:0005515
Acco10g2028 885 SMART WD40_4 679 719 IPR001680 GO:0005515
Acco10g2028 885 SMART WD40_4 846 885 IPR001680 GO:0005515
Acco10g2028 885 SMART WD40_4 761 799 IPR001680 GO:0005515
Acco10g2028 885 SMART WD40_4 805 844 IPR001680 GO:0005515
Acco10g2028 885 SMART WD40_4 636 675 IPR001680 GO:0005515
Acco10g2028 885 SMART WD40_4 594 633 IPR001680 GO:0005515
Acco10g2028 885 Pfam WD domain, G-beta repeat 764 798 IPR001680 GO:0005515
Acco10g2028 885 Pfam WD domain, G-beta repeat 604 632 IPR001680 GO:0005515
Acco10g2028 885 Pfam WD domain, G-beta repeat 640 675 IPR001680 GO:0005515
Acco10g2028 885 Pfam WD domain, G-beta repeat 682 719 IPR001680 GO:0005515
Acco10g2028 885 Pfam WD domain, G-beta repeat 849 885 IPR001680 GO:0005515
Acco10g2028 885 MobiDBLite consensus disorder prediction 85 174 - -
Acco10g2028 885 Coils Coil 114 134 - -
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 724 - -
Acco10g2028 885 MobiDBLite consensus disorder prediction 523 548 - -
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 768 800 IPR001680 GO:0005515
Acco10g2028 885 MobiDBLite consensus disorder prediction 85 139 - -
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 642 IPR001680 GO:0005515
Acco10g2028 885 SMART Lish 8 40 IPR006594 GO:0005515
Acco10g2028 885 ProSitePatterns Trp-Asp (WD) repeats signature. 662 676 IPR019775 -
Acco10g2028 885 Pfam LisH 10 36 IPR006594 GO:0005515
Acco10g2028 885 SUPERFAMILY WD40 repeat-like 595 885 IPR036322 GO:0005515
Acco10g2028 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 643 678 IPR001680 GO:0005515
Acco10g2028 885 CDD WD40 597 885 - -
Acco10g2028 885 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Acco10g2028 885 MobiDBLite consensus disorder prediction 146 174 - -
Acco10g2028 885 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2028 Acco-ChrAcco10 32801595 32814704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2028 646 844 Miscellaneous Gene Families AT5G08390 25.728 1.76e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Acco10g2028 WD40 0.064 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2298 05 38922081 38929117 Acco10g2028 10 32801595 32814704 CCT
Acco10g2028 10 32801595 32814704 Acco10g2028 10 32801595 32814704 ECH