LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g2017	ATGGTGCTTGTACAGTACAAATGTCAAAGTGAAATATCTTTTCAAGAAATGTACAGGAGGGACCATGCAAGAAAGGATCCATGGTCCCCGTGGGCCCCATCATCCTCTACAGAGCTACCAATGGGAAAGATGAAACCAGGTGAGGGAATAGTTAAAGATGTCAAAGGAAGAGCTGCATGTTACAAAGAAGACTGGCTTACCGGAACCTGTTCTGGCTTCAAGATATTGGGTCCAACTTTTTACATCTTTTTCGCTTCTGCTTTACCTGTCATCGCCTTCGGAGAGCAGCTTAATAGAGATACAGATGGAGCATTGAGCACGGTGGAAACGTTATTTTCTACTGCTCTTTGTGGAATTATCCACTCGATATTTGGTGGCCAGCCTCTGCTGATTTTGGGGGTTGCTGAACCCACCGCTATAATGTACACTTATTTGTACAGAATCTGCCTAAAAAGGCCAGAACTAGGTGCCAATCTGTATCTGGCTTGGGCTGGTTGGGTTTGTGTTTGGACAGGAATCATGTTGATTCTTCTTGCAGTTTTTAACACGTGCACGATTATCAACAAATTTACAAGAATCGCAGGGGAGCTATTCGGCATGTTGATTACTGTTCTTTTCATTCAAGAGGCTGTAAAGGGACTGGTGGCCGAGTTCCAAGTACCTAAGAACGAGAATCCATTGTCGGAGGAATTTCACTTTCAATGGCTGTACACAAATGGCTTACTTGCTATTATTTTCTCTTTCGGGGTACTCCTCACCGCCCACAAAAGCAGAACTGCCAGATCATGGCGTTACGGAACAGGGTGGATGCGAGCTTTCATAGCAGATTATGGGGTTCCAGCGGTGGTCTTGCTTTGGTCTGCGCTATCTTATATGGTACCGGCCAAAGTCCCACATGGTGTTCCCAGAAGGCTGGTTTGTCCCCTTCCTTGGGAAGCTGCATCTCTGTACCACTGGACCGTAGTCAAGGACATGGCTAAGGTACCAGTGCTTTACATCTTTGCGGCTATTATTCCTGCAGTGATGGTGGCAGGTTTATACTTCTTCGATCACAATGTAGCTTCCCAGTTGGCTCAACAAAAGGAATTCAACCTTAAAAAACCAGATGCTTACCACCACGATCTGCTCCTGCTTGGAATTATGACTTTGATTTGTGGTCTTCTTGGGCTTCCTCCATCAAATGGTGTCCTTCCACAGTCACCGATGCATACCAAGAGTTTGGCAGTTCTTAAGAGACAGAGAGTTGTAAGAAGAGCCAAGGAATGCATTCAGGATCAAAGGAGCAACTCAGAAATATACGGACAGATGCATGATGTGTTCATAGAAATGGATACAGCACCAACGAAACAAGAGTTGGCGACTTTGAAGGATGCTGTGATGAAACCTCATGAGAAAGACGGTGTAAAACAAAAATTTGATCCTGAGAAACACATCGATGCTTACTTGCCAGTACGTGTGAACGAGCAAAGATTAAGCAACTTTTTGCAGTCCTTCCTTGTGGGCGCATCCGTTTTTGCCATGCCTATTATTAGAATGATACCTACCTCAGTTCTATGGGGATATTTCGCTTATATGGCCATTGACAGTCTCCCTGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTTGTCACCCCTAGAAGACGTCACAAGATTTTGGAAGGTGATCATGCATCATTTGTAGAATCAGTGCCGTTCAAAACAATAGCTCTCTTCACAGTGATGCAGACTCTGTATTTTCTGTTCTGTTTCGGAGTGACATGGATACCTGTTGGTGGAGTATTGTTTCCACTACCATTCTTCATGCTCATAGTGATCAGGGAGCACGTGCTTCCCAAGATATTCGGCAATAGCGATCTCCAGGAACTGGATTCTTCCGAGTACGATGAAGTTGCCGGCGTGCCGCGTATGGATCCCATTGAAGTCCCAGATGATGATGCAGAGGATGATAAATCAGAAGATTTCTATGATGCGGAGTTATTGGATGAGATGACAACCCACAGGGGAGAGATGAAACATAGAATGAGTTTCACAATAAAGTATGGCATTCATGAGTATATATGCAGTAGACAGCTAAAGCCTAAGAGGGAAAAGGGCATTTGCGCAGTGAATCGGCGAGAGGGATCAATGGCGTCGTTCTTGCAGTCATTTCTGGATCCTAGGAAGAACTGGTTAGCTGCTCAGCACATGAAATCCGTCTCCACCCGCCTTCGCCATTACGGGCTCCGATATGATGATCTTTATGATCCGTATTACGATCTGGATGTGAAGGAGGCCCTGAATCGGCTGCCTAGGGAGATTGTTGACGCACGCAATCAGCGTCTTAAGCGTGCCATGGACCTTTCCATGAAGCACGAGTACCTCCCTGAGAATCTTCAGGCGATGCAGACACCATTCAGAAGCTACCTTCAAGATATGCTGGCCTTTGTGAAGAAGGAGAGAGCAGAGCGTGAGGAATTGGGAGCCTTGCCTCTTTACCAGAGAACCATTCCTTAA	2496	0.4559	MVLVQYKCQSEISFQEMYRRDHARKDPWSPWAPSSSTELPMGKMKPGEGIVKDVKGRAACYKEDWLTGTCSGFKILGPTFYIFFASALPVIAFGEQLNRDTDGALSTVETLFSTALCGIIHSIFGGQPLLILGVAEPTAIMYTYLYRICLKRPELGANLYLAWAGWVCVWTGIMLILLAVFNTCTIINKFTRIAGELFGMLITVLFIQEAVKGLVAEFQVPKNENPLSEEFHFQWLYTNGLLAIIFSFGVLLTAHKSRTARSWRYGTGWMRAFIADYGVPAVVLLWSALSYMVPAKVPHGVPRRLVCPLPWEAASLYHWTVVKDMAKVPVLYIFAAIIPAVMVAGLYFFDHNVASQLAQQKEFNLKKPDAYHHDLLLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQRVVRRAKECIQDQRSNSEIYGQMHDVFIEMDTAPTKQELATLKDAVMKPHEKDGVKQKFDPEKHIDAYLPVRVNEQRLSNFLQSFLVGASVFAMPIIRMIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPRRRHKILEGDHASFVESVPFKTIALFTVMQTLYFLFCFGVTWIPVGGVLFPLPFFMLIVIREHVLPKIFGNSDLQELDSSEYDEVAGVPRMDPIEVPDDDAEDDKSEDFYDAELLDEMTTHRGEMKHRMSFTIKYGIHEYICSRQLKPKREKGICAVNRREGSMASFLQSFLDPRKNWLAAQHMKSVSTRLRHYGLRYDDLYDPYYDLDVKEALNRLPREIVDARNQRLKRAMDLSMKHEYLPENLQAMQTPFRSYLQDMLAFVKKERAEREELGALPLYQRTIP	831

Showing 1 to 1 of 1 entries

Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g2017	831	Gene3D	Helical hairpin bin	57	99	-	-
	Acco10g2017	831	SUPERFAMILY	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	712	826	IPR036544	GO:0005750\|GO:0006122
	Acco10g2017	831	PANTHER	ANION EXCHANGE PROTEIN	41	632	IPR003020	GO:0005452\|GO:0006820\|GO:0016020
	Acco10g2017	831	Pfam	HCO3- transporter family	239	413	IPR011531	GO:0006820\|GO:0016020
	Acco10g2017	831	Pfam	HCO3- transporter family	484	574	IPR011531	GO:0006820\|GO:0016020
	Acco10g2017	831	Pfam	HCO3- transporter family	48	220	IPR011531	GO:0006820\|GO:0016020
	Acco10g2017	831	Gene3D	-	709	821	IPR036544	GO:0005750\|GO:0006122
	Acco10g2017	831	FunFam	Cytochrome b-c1 complex subunit 7	711	821	-	-
	Acco10g2017	831	Pfam	Ubiquinol-cytochrome C reductase complex 14kD subunit	713	818	IPR003197	GO:0005750\|GO:0006122

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g2017	Acco-ChrAcco10	32707976	32720077	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g2017	46	674	Antiporters	AT4G32510	65.692	0.0	879

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco05g2288	05	38836974	38841416	Acco10g2017	10	32707976	32720077	CCT
	Acco10g2017	10	32707976	32720077	Acco10g2017	10	32707976	32720077	ECH
	Acco10g2017	10	32707976	32720077	Acco09g1358	09	28909015	28914179	ECH
	Acco10g2017	10	32707976	32720077	Acco05g2288	05	38836974	38841416	ECH

Showing 1 to 4 of 4 entries