Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2001 ATGGGCTCTTGGAATCGACTTCTGGGCCTTGGCCCTCACTATAAACATGCCTCCATTTCCGATCCCACAACCCTATCATCAGTTGTCCACCGTGTTGCTGTACGGCCGGTTGTTCACAATCTTGAAGAGGTTCCGCTATCTGAAGCTTCTTTTCCCCCAATTGTATTTCAGCTAACAAATTTCATTTGCAGACCCTTTGAGCCACAAACTAGTTTTCTCTTTCAAGTCTTCGCGCAGAATATGGGAGAAACCAAGGATGAAGGATACGAGGAAGAGCTCCTTGATTATGAAGAGGAAGAAGACAAAGCCCCTGATTCTGTTGGAACCAAAGTCAATGGTGAAGCTGGAAAGAAGGGCTACGTTGGGATTCACAGTTCGGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCCATTGTAGACTCAGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATTCCTCAAGCAATCCTGGGCATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCGACCTTGCAGCAGATTGATCCTGTTGCAGGCCAAGTTGCTGCCCTTGTCCTATGTCATACGAGGGAATTGGCATACCAGATATGCCATGAGTTCGAGAGGTTCAGTACCTACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTCCACAAGGATCTGTTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTAGCATTGACTAGGGATAAGGATCTTTCATTAAAGAATGTCAGGCATTTTATTTTGGATGAGTGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATCTTCAAGATGACTCCTCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTCGATGACGAGGCCAAGTTGACCCTTCATGGACTCGTGCAGCACTACATCAAATTGAAAGAGGAAGAAAAGAACCGGAAGTTGAATGATCTTCTTGACGCACTAGACTTCAACCAAGTTGTTATCTTTGTGAAGAGTGTCAGTAGAGCAGCTGAGCTTGACAGACTACTCGTGGAGTGCAACTTCCCATCTATATGCATCCACTCTGGCATGTCACAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTTAAGGAGGGCCATAGCAGGATTCTTGTGGCAACAGACTTGGTTGGGAGAGGGATCGACATTGAACGTGTTAACATTGTAATAAACTATGACATGCCTGATTCTGCTGACACCTACTTGCACAGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTTGTTTCATGTGCTGCTGATGTTGATGTTCTTAACAATGTTCAGTCGAGATTTGAAGTTGATATAAAGCAGCTTCCAGAGCAGATTGATACCTCTACATACATGCCATCATAG 1524 0.4383 MGSWNRLLGLGPHYKHASISDPTTLSSVVHRVAVRPVVHNLEEVPLSEASFPPIVFQLTNFICRPFEPQTSFLFQVFAQNMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2001 507 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Acco10g2001 507 CDD SF2_C_DEAD 343 472 - -
Acco10g2001 507 SMART ultradead3 145 346 IPR014001 -
Acco10g2001 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 503 IPR001650 -
Acco10g2001 507 Gene3D - 122 338 IPR027417 -
Acco10g2001 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 474 IPR027417 -
Acco10g2001 507 SMART helicmild6 382 463 IPR001650 -
Acco10g2001 507 Pfam Helicase conserved C-terminal domain 356 463 IPR001650 -
Acco10g2001 507 FunFam DEAD-box ATP-dependent RNA helicase 339 507 - -
Acco10g2001 507 Pfam DEAD/DEAH box helicase 151 316 IPR011545 GO:0003676|GO:0005524
Acco10g2001 507 Gene3D - 339 506 IPR027417 -
Acco10g2001 507 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 481 - -
Acco10g2001 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 330 IPR014001 -
Acco10g2001 507 CDD DEADc_DDX39 125 332 - -
Acco10g2001 507 FunFam DEAD-box ATP-dependent RNA helicase 56-like 114 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2001 Acco-ChrAcco10 32613205 32617837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2001 81 507 Eukaryotic Initiation Factors Gene Family AT5G11200 83.156 0.0 754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2267 05 38680019 38685559 Acco10g2001 10 32613205 32617837 CCT
Acco10g2001 10 32613205 32617837 Acco10g2001 10 32613205 32617837 ECH
Acco10g2001 10 32613205 32617837 Acco05g2267 05 38680019 38685559 ECH