Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1999 ATGGTACAATCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTCTTCTAAAGAAAAGGGTGTGGCTGGGGACATTTGAGACGGCGGAGGCAGCAGCGAGGGCATATGATCAAGCAGCCATTTTGATGAATGGAAGGAACGCGAAGACGAATTTCCCGGCACCAATGAATGAAGCTGAAGAAGGAGGAGGAGGAGGAGGGTCTTTCTTGTCTCCCAAGGCACTATCAGAGCTGTTATTGACAAAGCTTAAGAAATGCTGCAAGGACCCGTCTCCTTCTTCCCTCACTTGTCTCAGGCTTGATTCTGATAATTCTCACATTGGTGTGTGGCAAAAGAGACCTGGACCTCGCTCTGGTTCCAATTGGGTCATTAGGGTTGAGCTTGGCAAGAAACAAGAAGAAGCACAACAAAATGATGATAAAACTTCTTCTGCAGATGCCATTAGCAGTAGTGAAGCTGCAAGCGAGGTTGAAGATGAAGAGGCAATGCAGATGATTGATGAGCTTCTTAATTTGAACTATCCTTTTGATTTTTCCTCAACTAGCCCTCAACAAGAACAAAGATAA 597 0.4623 MVQSKKFRGVRQRQWGSWVSEIRHPLLKKRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPAPMNEAEEGGGGGGSFLSPKALSELLLTKLKKCCKDPSPSSLTCLRLDSDNSHIGVWQKRPGPRSGSNWVIRVELGKKQEEAQQNDDKTSSADAISSSEAASEVEDEEAMQMIDELLNLNYPFDFSSTSPQQEQR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1999 198 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Acco10g1999 198 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Acco10g1999 198 MobiDBLite consensus disorder prediction 140 172 - -
Acco10g1999 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 161 - -
Acco10g1999 198 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Acco10g1999 198 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Acco10g1999 198 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Acco10g1999 198 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Acco10g1999 198 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Acco10g1999 198 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Acco10g1999 198 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1999 Acco-ChrAcco10 32607329 32608009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1999 1 185 AP2-EREBP Transcription Factor Family AT5G25390 60.541 1.41e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco10g1999 AP2 1.5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1999 10 32607329 32608009 Acco10g1999 10 32607329 32608009 ECH
Acco13g0912 13 7035330 7036129 Acco10g1999 10 32607329 32608009 ECH