Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1969 ATGCTTTTCTACGTATTGTTGTCGGTTGCTTCAGATCAGCCTCTTGCCCTTGGTGGCTCCGAGCTTGCATTAGGGTTTGTGAGCACCGTTTCGTGTTTTCTTGCGGCTTGCATCTTTTACCTTGAACCCATAACAATGGCGGAACAGACCGAGAAGGCCTTCTTGAAGCAACCTAAAGTGTTTCTCTGTTCGAATAAATCTGGAAAGGGAAAGAGGCCTGGAAAAGGAGGGAACAGATTCTGGAAAGGAGTCGGTTTGGGTTTCAAGACTCCCAGAGAAGCCATTGAAGGGACCTACATTGATAAAAAATGCCCTTTCACTGGTACTGTGTCCATCCGGGGCCGCATTATTGCTGGTACCTGCCATAGTGCCAAGATGACAAGGACCATCATTGTTCGCCGCAACTACCTTCATTTTGTGAAAAAATACCAAAGGTATGAAAAGAGACACTCAAACATTGCAGCACATATATCACCATGTTTCCGTGTGAGGGAGGGAGACCATGTTATCATTGGGCAATGCAGGCCTCTTTCAAAGACTGTAAGGTTTAATGTGCTGAAAGTGATTCCAGCTGGGTCTTCTGGAGGTGTGAAGAAGGCTTTTACTGGAGCGTAA 615 0.4618 MLFYVLLSVASDQPLALGGSELALGFVSTVSCFLAACIFYLEPITMAEQTEKAFLKQPKVFLCSNKSGKGKRPGKGGNRFWKGVGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIAAHISPCFRVREGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTGA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1969 204 Pfam Ribosomal_S17 N-terminal 49 117 IPR032440 -
Acco10g1969 204 Gene3D - 37 203 - -
Acco10g1969 204 FunFam 40S ribosomal protein S11 46 203 - -
Acco10g1969 204 PRINTS Ribosomal protein S17 family signature 133 156 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco10g1969 204 PRINTS Ribosomal protein S17 family signature 166 176 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco10g1969 204 PRINTS Ribosomal protein S17 family signature 176 183 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco10g1969 204 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 55 194 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco10g1969 204 SUPERFAMILY Nucleic acid-binding proteins 113 192 IPR012340 -
Acco10g1969 204 Pfam Ribosomal protein S17 119 187 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco10g1969 204 ProSitePatterns Ribosomal protein S17 signature. 166 178 IPR019979 GO:0003735|GO:0005840|GO:0006412
Acco10g1969 204 NCBIfam 30S ribosomal protein S17 100 188 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1969 Acco-ChrAcco10 32411543 32413667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1969 46 203 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.241 1.93e-94 270