Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1965 ATGGCCTCCCATAATCAACCACACCTCTCCCCCCACCATTTCTCCGACTCTGATCACCCCCTCCTCCATTCCAACTATTTCCTCAACCTCCACTCTACCGCCCTCTCCGACTCGACCGGAGCTGCTCCCCACCGCCCGATCCTCCGCCCTGACCACACTCACGTCATTGACGACGTCGCTGCCGCCTTGTCCCACTACTCCGCCGATTTGAATATGGCTTCGGGCGACAACCCCAATGCGAAGAGCGAGGTGGGTGTGGAGGATGCGAGGTCCAAGGCTGAGATTCTAGCGCATCCGCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGTTTGCGGATCGCCACGCCGGTCGACCAGTTGCCCAGGATTGACGCTCAACTAGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTGCTTTGGGACATGGAGCTCAAAGCATGGTTGGCGATGAGAAGGGACTCGATCTATTCATGTCCCATTATGTTCTGTTGCTCTGCTCCTTCAAAGAACAACTTCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTCATGGCATGTTGGGAGATAGAACAATCCTTACAAAGTTTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCTACCATGTCTGATGATGAAGAAGACCAATTAAATAGTGATGGCAATATTTTTGATGGTTCAGACAGCATGGGGTTTGGCCCTCTTGTTCCAACCGAGAATGAGAGATCACTCATGGAGAGAGTTAGGCAAGAGTTGCAACATGAACTGAAACAGGGCTATAAGGATAAAATTGTGGATGTAAGAGAAGAAATTTTGCGAAAGAGACGAGCTGGGAAACTTCCTGGTGATACCACCTCTGTCCTTAAAGCTTGGTGGCAAGCCCATTCCAAGTGGCCTTACCCTACTGAGGAAGACAAGGCAAAGTTGGTGCAGGAGACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAAAGGAAAAGGAACTGGCACAGCAATGCTTCAACTTCTACGGTCTCAAAGAGCAAGCGTAAGAGGTGA 1053 0.5043 MASHNQPHLSPHHFSDSDHPLLHSNYFLNLHSTALSDSTGAAPHRPILRPDHTHVIDDVAAALSHYSADLNMASGDNPNAKSEVGVEDARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGAQSMVGDEKGLDLFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQLNSDGNIFDGSDSMGFGPLVPTENERSLMERVRQELQHELKQGYKDKIVDVREEILRKRRAGKLPGDTTSVLKAWWQAHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNASTSTVSKSKRKR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1965 350 Gene3D - 272 348 - -
Acco10g1965 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 106 336 - -
Acco10g1965 350 Pfam KNOX2 domain 149 199 IPR005541 GO:0003677|GO:0005634
Acco10g1965 350 Pfam KNOX1 domain 92 132 IPR005540 GO:0003677|GO:0005634
Acco10g1965 350 FunFam homeobox protein knotted-1-like 3 isoform X1 274 335 - -
Acco10g1965 350 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Acco10g1965 350 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Acco10g1965 350 SMART KNOX2_2 145 200 IPR005541 GO:0003677|GO:0005634
Acco10g1965 350 SUPERFAMILY Homeodomain-like 275 338 IPR009057 -
Acco10g1965 350 CDD homeodomain 276 337 IPR001356 GO:0003677
Acco10g1965 350 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
Acco10g1965 350 SMART HOX_1 275 340 IPR001356 GO:0003677
Acco10g1965 350 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1965 Acco-ChrAcco10 32396231 32398922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1965 56 350 Homeobox Transcription Factor Family AT5G25220 78.947 3.19e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco10g1965 KNOX2 3.1e-18 No_clan