LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g1961	ATGAAGCTTCTTTTGTTGCTTCCTTTTCTTCAAGGTCCCATTTGGATTTGTGCTGCGGCCGAAACCCCACTTTTGTCACCCACAGTCCCACCTGTGTCCCTAGCATCAATGGCGCCATTTTCTCCAGATATTCAGGTGGAGAATGAATGGAAACCAACAGATTTAGACATGAGAGTGGTAATAGCTCTCATCGTAGCCGGAACTACACTTGGTGCAGTCATTTTGTCTGTCTTATGCTTCTGCATTTGTTACAAGAAATGTCTGTCCAAATTCAACAGGAAAAATGTCCAAAGCTTAGATGTGGAGAAAGGGCTTGCGAGAGCCTCATCTTTAAGAAAATTTAGTTCATTCAAGATGGATGGTAAGAATGGGTCTATTTCGATTTTTGATTATAAGACTATACAAAAGGCGACGAGCAATTTTCTGGAAACTAATATCTTGGGAGAGGGTGGATTTGGATGCGTTTACAAGGCTCGATTGCATCATAACTTGGATGTTGCCGTCAAGAAATTGAACTGTGAAAGTCAGGACGCTCAGAGAGAGTTTCAGAACGAGGTGGACATGTTAAGTAAAATTCAGCATCCAAATATAATCTCTTTGCTGGGTTGTAGCACCAATGGTGACACGAGGTTTATTGTCTATGAATTGATGCAAAATGGATCTTTGGAGACTCAATTACATGGACCCTCTCATGGATCGGCGTTGACATGGGACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAGTATCTGCATGAAATCTGTAAGCCCCCAGTGATCCATAGAGATCTGAAATCATCTAATATTCTTTTAGACGCAAATTTCAATGCCAAGCTATGTGATTTCGGATTTGCCATAGCTGATGGGTCCCAAGACAAGAATGACATAAAAATCTCAGGCACATTGGGATATGTAGCTCCTGAGTATGTATTAGATGGTAAATTAACTGATAAAAGCGATGTGTATGCATTCGGAGTTGTGCTTCTAGAACTTGTGTTAGGGAGGAAGCCAGTGGAAAAGCTAACAGCAACACAGTGCCAGTCTATAGTCACATGGGCGGTGCCACAGCTCAGCGACAGATCCAAGCTTCCCAACATTGTGGATCCCATGATCAAGAATACAATGGATCTCAAACATTTATATCAGGTTGCTGCCATGGCGGTGCTGTGCGTGCAACCGGAGCCGAGTTACCGTCCGCTGATTACAGATGTTCTGCACTCTCTCATCCCTCTCGTTCCCGTAGAGCTTGGAGGAACACTCAGAGCTCCACAAGCGTCACAGCCTCCTTCTTCAACATAA	1308	0.435	MKLLLLLPFLQGPIWICAAAETPLLSPTVPPVSLASMAPFSPDIQVENEWKPTDLDMRVVIALIVAGTTLGAVILSVLCFCICYKKCLSKFNRKNVQSLDVEKGLARASSLRKFSSFKMDGKNGSISIFDYKTIQKATSNFLETNILGEGGFGCVYKARLHHNLDVAVKKLNCESQDAQREFQNEVDMLSKIQHPNIISLLGCSTNGDTRFIVYELMQNGSLETQLHGPSHGSALTWDMRMKIALDTARGLEYLHEICKPPVIHRDLKSSNILLDANFNAKLCDFGFAIADGSQDKNDIKISGTLGYVAPEYVLDGKLTDKSDVYAFGVVLLELVLGRKPVEKLTATQCQSIVTWAVPQLSDRSKLPNIVDPMIKNTMDLKHLYQVAAMAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRAPQASQPPSST	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g1961	435	ProSiteProfiles	Protein kinase domain profile.	141	412	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g1961	435	Gene3D	Transferase(Phosphotransferase) domain 1	217	416	-	-
	Acco10g1961	435	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	262	274	IPR008271	GO:0004672\|GO:0006468
	Acco10g1961	435	SUPERFAMILY	Protein kinase-like (PK-like)	122	411	IPR011009	-
	Acco10g1961	435	PANTHER	OS01G0750732 PROTEIN	39	414	-	-
	Acco10g1961	435	CDD	STKc_IRAK	147	414	-	-
	Acco10g1961	435	SMART	serkin_6	141	412	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g1961	435	FunFam	Protein kinase superfamily protein	108	216	-	-
	Acco10g1961	435	FunFam	probable receptor-like protein kinase At1g80640	217	416	-	-
	Acco10g1961	435	Pfam	Protein kinase domain	144	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g1961	435	Gene3D	Phosphorylase Kinase; domain 1	102	216	-	-
	Acco10g1961	435	ProSitePatterns	Protein kinases ATP-binding region signature.	147	170	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g1961	Acco-ChrAcco10	32371282	32373941	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g1961	122	415	Receptor kinase-like Gene Family	AT3G58690	47.333	3.07e-96	293

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-X	Acco10g1961		Pkinase	1.4e-49	CL0016