Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1960 ATGGCAGCCATCACTGATCCGAAGAAGCTTGAAGTGATGGTGCAAAAGAGGTTCAGAGTGAAGAAGAAGCTGGCCAAGAAGATGAGGCAGAACAGACCTATCCCCTACAGGATCCCTATAAGGACTGATAATACCATCACATCCAGGCCTTTAATGGACAGGGAACAGATTCTATGTACGTGGGGCTGTATAGATGCTGGAAAGCAATGGCCTCCGTTCGATCTTAAATACAAGATAATGGCTTCGGCAATGCTTTCTATCACTTCGCCCTCAACCTCCACTTCACTGTCGATGCATGACTCCCACAAGGGAAAACCGAAATTTGGAGGTAGTCGTCTGAGATTTAGCAAGGAAAAAGGCAACCCCTTCTCATCTGTCAGGTCTTCTGGCAGGATATCTATGTCTATTGCCGTTAATGTTTCTCGATTTGAGGGCATTCCAATGGCTCCTCCTGATCCAATTCTTGGAGTTTCTGAAGCATTTAGAGCAGACACGAATGAAGTCAAGCTCAATCTCGGAGTTGGGGCCTATAGAACTGAAGATCTACAGCCTTATGTTCTTAATGTTGTCAAGAAGGCAGAGAATCTTATGCTGGAACGAGGAGAAAACAAAGAGTACCTGCCCATTGAGGGTTTAGCTGCATTTAATAAGGCAACTGTAGAGTTGTTACTTGGCGCGGACAACCCTGTAATCAAACAACAAAGAGTTGCAACTGTCCAAGGCCTTTCAGGAACTGGTTCTCTGCGATTAGCTGCAGCTCTCATAGAACGATACTTTCCTGGAGCAAAAGTTCTGATATCCTCTCCAACATGGGGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCATGGTCTGAATATAGATATTATGATCCCAAGACTGTTGGTTTGGATTTTGAGGGGATGATAGAAGATATTAAGGCAGCTCCTGAAGGATCTTTTGTCTTACTTCATGGATGTGCTCATAACCCTACTGGCATTGATCCAACACCTGAACAGTGGGAAAAAATAGCTGATTTTATTCAGCAAAAGAACCTCATTCCATTTTTTGACGTAGCCTACCAGGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGATTGTTTGTAGCACGTGGCATGGAAGTTCTGGTTGCTCAGTCATACAGTAAGAATCTAGGTCTTTATGCTGAAAGAATTGGAGCAATGAATGTCGTTTCCTCATCTCCCGAAGCTGCAGCAAGGGTAAAAAGTCAACTGAAAAGGCTGGCCCGACCAATGTACTCTAATCCCCCTGTTCATGGAGCTAGGATTGTCGCCAATGTTGTTGGAGACCCAGCTCTCTTCAGTGAATGGAAAGCCGAGATGGAAATGATGGCTGGAAGGATCAAGAATGTGAGACAAAAGCTATTTGATAGCATTTCTTCAAAGGACAAGAGTGGAAAGGATTGGTCATTTATCCTTAAGCAAATAGGCATGTTCTCGTACACAGGCTTGAACAAAAACCAGAGTGATAACATGACAAATAAGTGGCGTGTGTACATGACAAAGGATGGAAGGATTTCCTTGGCGGGATTGTCTTTGGCCAAATGTGAATACCTTGCAGATGCTATTATTGATTCCTTCCACAATGTCAGCTGA 1632 0.4375 MAAITDPKKLEVMVQKRFRVKKKLAKKMRQNRPIPYRIPIRTDNTITSRPLMDREQILCTWGCIDAGKQWPPFDLKYKIMASAMLSITSPSTSTSLSMHDSHKGKPKFGGSRLRFSKEKGNPFSSVRSSGRISMSIAVNVSRFEGIPMAPPDPILGVSEAFRADTNEVKLNLGVGAYRTEDLQPYVLNVVKKAENLMLERGENKEYLPIEGLAAFNKATVELLLGADNPVIKQQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADFIQQKNLIPFFDVAYQGFASGSLDEDAASVRLFVARGMEVLVAQSYSKNLGLYAERIGAMNVVSSSPEAAARVKSQLKRLARPMYSNPPVHGARIVANVVGDPALFSEWKAEMEMMAGRIKNVRQKLFDSISSKDKSGKDWSFILKQIGMFSYTGLNKNQSDNMTNKWRVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1960 543 Gene3D Ribosomal protein L39e 14 54 IPR023626 -
Acco10g1960 543 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 385 398 IPR004838 GO:0003824|GO:0009058|GO:0030170
Acco10g1960 543 Pfam Aminotransferase class I and II 169 535 IPR004839 GO:0009058|GO:0030170
Acco10g1960 543 PRINTS Aspartate aminotransferase signature 484 502 IPR000796 GO:0006520|GO:0008483
Acco10g1960 543 PRINTS Aspartate aminotransferase signature 316 335 IPR000796 GO:0006520|GO:0008483
Acco10g1960 543 PRINTS Aspartate aminotransferase signature 415 440 IPR000796 GO:0006520|GO:0008483
Acco10g1960 543 PRINTS Aspartate aminotransferase signature 347 359 IPR000796 GO:0006520|GO:0008483
Acco10g1960 543 Pfam Ribosomal L39 protein 20 50 IPR000077 GO:0003735|GO:0005840|GO:0006412
Acco10g1960 543 Gene3D - 201 442 IPR015421 GO:0003824
Acco10g1960 543 FunFam Aspartate aminotransferase 428 535 - -
Acco10g1960 543 CDD AAT_like 170 535 - -
Acco10g1960 543 Gene3D Aspartate Aminotransferase, domain 1 146 535 IPR015422 GO:0003824
Acco10g1960 543 FunFam Aspartate aminotransferase 201 442 - -
Acco10g1960 543 SUPERFAMILY PLP-dependent transferases 141 537 IPR015424 -
Acco10g1960 543 PANTHER ASPARTATE AMINOTRANSFERASE 137 541 IPR000796 GO:0006520|GO:0008483
Acco10g1960 543 SUPERFAMILY Ribosomal protein L39e 15 50 IPR023626 -
Acco10g1960 543 MobiDBLite consensus disorder prediction 91 114 - -
Acco10g1960 543 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1960 Acco-ChrAcco10 32365253 32370644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1960 15 46 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 71.875 6.18e-09 50.4