Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1959 ATGGCAAACTGTTGCCTTAATTTAAATGATCCTATTAGCAAGTTGCAGACTTTGATCCTCATCTTGGTCCATTCTTTGCCTGCAACAGGTGCGTGTGACTGTGAAAGAACTCAACTACAAAAACCCTCCTCTGCTCTTCCTTCTGGTGTTGGAACAAAAACACACACTCAAACATTTACGCCCACACTTTGCAAACAAAAACACGTTTCCATTTTTTTCCCAAGCATGGCCAGACCACAACAGAGATATCGAGGAGTCCGACAAAGGCACTGGGGATCTTGGGTCTCTGAAATTCGACACCCTCTATTGAAGACGAGAATATGGCTTGGTACATTTGAAACTGCAGAAGATGCAGCCAGAGCTTACGATGAAGCAGCGAGGTTGATGTGTGGTCCAAGAGCAAGAACGAATTTCCCTTACAACCCCAATGCGTCTCAATCATCATCTTCTAAGATTCTCTCTGCAACTCTCACTGCTAAACTTCATAGATGTTATATGGCTTCGCTTCAAATGACCAGACCCACGGTACCCGAACCTGTGCGAGCAACTTCTTCTCCAAATGTTGTGTCGACGAGCACTAGCAACTCGTCTTCTTTGAAAAGCAGAGGAACCAATATTACAATGTTGGGAGAGAAGAAAGCAAAGGAGGAGGCTGAAGAATCAGAGGAAAAGTGGGGTGTGAAGAAGGTGAAGGTGGAAAGTGGTGAGCAATTCAAGCCTCTTGAAGAGGATCATATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGATCTATTGAGCTCTGCTCTGTCATGCCACCTCAGTAA 807 0.4449 MANCCLNLNDPISKLQTLILILVHSLPATGACDCERTQLQKPSSALPSGVGTKTHTQTFTPTLCKQKHVSIFFPSMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSSKILSATLTAKLHRCYMASLQMTRPTVPEPVRATSSPNVVSTSTSNSSSLKSRGTNITMLGEKKAKEEAEESEEKWGVKKVKVESGEQFKPLEEDHIEQMIEELLDYGSIELCSVMPPQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1959 268 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Acco10g1959 268 MobiDBLite consensus disorder prediction 177 204 - -
Acco10g1959 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 68 213 - -
Acco10g1959 268 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Acco10g1959 268 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Acco10g1959 268 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Acco10g1959 268 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Acco10g1959 268 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Acco10g1959 268 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Acco10g1959 268 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Acco10g1959 268 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1959 Acco-ChrAcco10 32359077 32360438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1959 76 268 AP2-EREBP Transcription Factor Family AT5G25190 66.667 1.60e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco10g1959 AP2 1.4e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2213 05 38200820 38201458 Acco10g1959 10 32359077 32360438 CCT
Acco10g1959 10 32359077 32360438 Acco10g1959 10 32359077 32360438 ECH