Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1954 ATGGAACGAGTTTGTGACAAGGTTCCTCCTAGTCCAAGTACTCCATTGCAGAGCCCAAAGGAGAAGAAACACCTCTCTGTTGAGGAGGAGAAAGAAGAAGAGGAAGAGGAAAAGACATATTCTTTGTTAGATCTGAACGTGAATAGCGATGATTCTGCTGTTGGGTTCAATACGGAACTGCATCTCATGGCCAATTTGGATGTAGATATGGAGAAATCTAAAACATCAGAAAATTCTGGTGCTTTGGAGTCAGAGCCACGTGTATTCTCTTGCAAGTACTGTCAGAGGAAGTTTTACAGTTCACAAGCGCTTGGAGGACACCAAAATGCGCATAAGAGGGAGAGATTAATAGCGAAAAGAGGACAGAGGGAGATTATGGCCTCTGCTACAGACTTTGGGACTCCTTTTCCGCTTCATAATCACAGGTTTACAAGTATGGCGTCTCTACCCCTCCACGGTGCTTCTGGAAATAAACCACTTGGAATTCAGGCACACTCCATGATTCACAAACCTTCTCATATTTCTTCTAATTTTGGGTTTGGAAACAGCCATGGATATCATGGTTGGTCAAGGCCCCTGATTGATCAGAAACCCAGAATAGGGAAGCTAGAGATGGCTAACTTTCACAGGACAACAACATTAGGCTTCTCATCACGAGGCAGTGTTGGTAGGCTTGAAACGGTAAAGACGATGGTTGGGTCTGGAGTCAGTGAGGAAATTACTGGGTATTTGGTAAGTGGAACTCTATTGAAGACTGATCAAGAAGAAACAAAGCACCTTGATTTATCCCTCAAGCTCTAG 801 0.4382 MERVCDKVPPSPSTPLQSPKEKKHLSVEEEKEEEEEEKTYSLLDLNVNSDDSAVGFNTELHLMANLDVDMEKSKTSENSGALESEPRVFSCKYCQRKFYSSQALGGHQNAHKRERLIAKRGQREIMASATDFGTPFPLHNHRFTSMASLPLHGASGNKPLGIQAHSMIHKPSHISSNFGFGNSHGYHGWSRPLIDQKPRIGKLEMANFHRTTTLGFSSRGSVGRLETVKTMVGSGVSEEITGYLVSGTLLKTDQEETKHLDLSLKL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1954 266 Gene3D Classic Zinc Finger 67 134 - -
Acco10g1954 266 SUPERFAMILY beta-beta-alpha zinc fingers 86 116 IPR036236 -
Acco10g1954 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Acco10g1954 266 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 266 IPR044246 GO:0009788
Acco10g1954 266 MobiDBLite consensus disorder prediction 1 39 - -
Acco10g1954 266 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Acco10g1954 266 FunFam Zinc finger protein 2 67 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1954 Acco-ChrAcco10 32339393 32340193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1954 25 266 C2H2 Transcription Factor Family AT5G10970 40.239 5.61e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco10g1954 None None None