Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1952 ATGAATACTCGTGTCGACAAAATGACGGCGGAGACCAGAATGGATGATTCCAGAGACCAGTTTCCGGTAGGAATGCGTGTTCTTGCCGTTGACGATGACCCAACTTGCCTTTTCATGTTGGGGGCTCTTCTTCGAAAATGCCAATATAACGTGACGACAACTAATCAGGCAATAGAAGCATTGGAGTTGTTGAGAGAAAACAGAAACAAGTTTGACCTAGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAGCTACTCGAGCATGTAGGACTTGAGATGGACTTACCAGTCATAATGTTGTCTGCACATGGTGACCCGAAACTAGTGATGAGGGGAATTACCCATGGAGCATGTGATTATCTGCTGAAACCTGTTCGAATGGAAGAGCTAAAGAACATTTGGCAGCATGTGATCAGGAGGAGGAAGTTTGATTCAAAGGAGCAGAACAAACCCAACAACCAAGACAAGCAGCCCCTTGCTGGTAGCGGCTGCAGTCCAGGGTCAGCAGGAACAAGCAACACAGATCAAAAGATGACCAAGAAAAGGAAGGATCAGAATGATGAAGATGATGAGCATGAGGAGGACCCATCGACCCAGAAGAAGCCCCGGGTTGTCTGGACAGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAAGCTGTACCGAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACTAGGGAGAATGTGGCTAGCCATCTCCAGAAATATAGGCTTTATCTGAAAAGAATCAGTTGTGTGGCGAACCAACAGGCTAGTCTGGTGGCAGCCTTAGGTACTGCAGATCAATCCTATTGGAGAATGGGTTCTATGAGTGGTCTCAGCAATTTGCATTCATTGAGTGCTCCTAGACAGTTTCAGAACACTGCTTTCAGACCCCTCCCATCTAGTGGGGTAATTAGTAGATTGAACACTCCTTCTGGCCTGGGTGTGCATGGACTGCCTTCTTCAAGAAATATTCAGTTTGGTTGTGCACAGAATTCAAACAATTCTATGAATGATCCACTCAAGTTCCAGTCAACCATTGTTCATGGTAACCAAAATGGCAATTCAGTTCTGGGAATAACAGGTCATACTGAGCGTGATCAATTACAACACCATAAGCATAAAAGCATTAGTTCTGTTCAAGACATGGCGAATGCGAGCGGCTCACACACTTCACTTCCAAGTGTAATAAACAACTCCTTTATGGTAGCAGCGCATCCTCAAAACACGCAAGGGGGAGGAGCAAATGAGAATTTATCTCCAGCAGATTCTCAACCTTCAGAAATATCTTGCTCTTTGCTGGATAATGGTAGTGGTGGTGATCATTGGTCGGATAGTGTTAAGCCAACTCAAATCCTGCCAAGTTCTTATCCACCAACCGGGTTTCCTAGACAAATGGCTGCATCTCCAACAGAGAACTTGACTTCTATACCCTTGCGTGTTGGGAATCCAAGTGGTTCTTCATCCATCACTTTAATGTACAGTCAATCCCATGATGTAACAGCAAATGCAAATTCCCAAGGAGACATTTTCGCTAATTCCTCAGGGCACATAAGCAGCAATGTACCATTTCAAGGGTGGGAAAACCGAAATCAGGATGCTGCTTGCCGTTCAAATGTTATGTGTAGCTCTCTAAACTCTCTGATTCATGTAAATAGTGGTGTTAGTGGATCAGCTAGTCCTTCTCCAACAGACCCAGCCTTCTACAGGAACTTGAACTTCAATTGTGGTAATCCCATACAAACTAGGCATGATGGGTTTGCAAAACTTGCTGAAGAGATCCCCTTGAGACAAGATCAAGGGTATATCATACGTGAGCAGATGGCGCAACAGAATCAAATCTCTAACAATCTTGGTTCACTGGATGACTTAGTCAGTTCGCTGATGAAACAGGATGAAGACAAGGTGAAATTATTGGATGAAGACTTAATGTGTAATAATTACACTGTGGGGACATCGATGTGA 2004 0.4391 MNTRVDKMTAETRMDDSRDQFPVGMRVLAVDDDPTCLFMLGALLRKCQYNVTTTNQAIEALELLRENRNKFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAHGDPKLVMRGITHGACDYLLKPVRMEELKNIWQHVIRRRKFDSKEQNKPNNQDKQPLAGSGCSPGSAGTSNTDQKMTKKRKDQNDEDDEHEEDPSTQKKPRVVWTVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQASLVAALGTADQSYWRMGSMSGLSNLHSLSAPRQFQNTAFRPLPSSGVISRLNTPSGLGVHGLPSSRNIQFGCAQNSNNSMNDPLKFQSTIVHGNQNGNSVLGITGHTERDQLQHHKHKSISSVQDMANASGSHTSLPSVINNSFMVAAHPQNTQGGGANENLSPADSQPSEISCSLLDNGSGGDHWSDSVKPTQILPSSYPPTGFPRQMAASPTENLTSIPLRVGNPSGSSSITLMYSQSHDVTANANSQGDIFANSSGHISSNVPFQGWENRNQDAACRSNVMCSSLNSLIHVNSGVSGSASPSPTDPAFYRNLNFNCGNPIQTRHDGFAKLAEEIPLRQDQGYIIREQMAQQNQISNNLGSLDDLVSSLMKQDEDKVKLLDEDLMCNNYTVGTSM 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1952 667 PIRSF RR_ARR_type-B 7 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Acco10g1952 667 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Acco10g1952 667 MobiDBLite consensus disorder prediction 419 482 - -
Acco10g1952 667 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Acco10g1952 667 Gene3D - 24 161 - -
Acco10g1952 667 Gene3D - 200 263 - -
Acco10g1952 667 CDD REC_typeB_ARR-like 27 141 - -
Acco10g1952 667 Pfam Response regulator receiver domain 27 135 IPR001789 GO:0000160
Acco10g1952 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 342 IPR045279 GO:0009736
Acco10g1952 667 MobiDBLite consensus disorder prediction 155 178 - -
Acco10g1952 667 MobiDBLite consensus disorder prediction 419 471 - -
Acco10g1952 667 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Acco10g1952 667 FunFam Two-component response regulator 200 263 - -
Acco10g1952 667 SUPERFAMILY CheY-like 24 149 IPR011006 -
Acco10g1952 667 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Acco10g1952 667 MobiDBLite consensus disorder prediction 147 205 - -
Acco10g1952 667 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Acco10g1952 667 SMART REC_2 25 137 IPR001789 GO:0000160
Acco10g1952 667 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1952 Acco-ChrAcco10 32322442 32326197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1952 8 662 Response Regulator Gene Family AT2G25180 43.750 2.88e-134 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco10g1952 Response_reg 1.7e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2202 05 38085141 38088166 Acco10g1952 10 32322442 32326197 CCT
Acco10g1952 10 32322442 32326197 Acco10g1952 10 32322442 32326197 ECH