Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1950 ATGGACCAGCCATGCATTTGCGAGAAACCTCCCCTCGTAGAAAGAGTGATCATGCTGGCTAATGGTGCTGTCCAGACACATCCAATCATGAGTAGTCTGCTTGAGAGGCTTCGAGCAAGATCAGATCGCAAGCCCATCTACAGCATTGATGAATCAGACGAAGAAGCTGATATTTTGCCCGGAAAACACGAGCCAACTCAGGAAACGTTTGAGAGGATAGTCAGAAGTGATACGAAAGAAAATTGTTGTCAAGCTTGTGGAGAAAATGGAGATCTTTTGAACTGTGAAACTTGCACTTATGCCTATCATCCTAGGTGTTTACTTCCACCACTTAGAGCTCCCGTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGACTGTGAGATGCGCCCTACTGTAGCAGACGACAGTGATTTCACCAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATATCTCCATTGCACGTGGGTGCCAGAGAAGGAGTTTCTGAAAGCTTACAAGACACATCCTCGCCTAAAGACAAAAGTAAATAACTTCCATCGTCAAACGTCATCAGTTAATACTTCTGATGAAGACTTTGTTGCAATTCGACCTGAATGGACCACTATTGATCGGATTATTGCTTGCAGGGGTGATGATGATAAGGAATATCTTGTTAAATGGAGAGAGCTTTCGTATGATGAATGCTCTTGGGAGTCTGAGTCTGATATTTCTGAGTTTCAGGCAGAAATTGAAAGATTCGACAGATTTCAGTCTAGGTCTAGGAAATTTGTTATTTCTAATAAGCAGAAAGGCAGTGTTAGGGACGGTGCAGAATTGATGAGGCATCAGAAAGAATTTCATCAGTGTGAACATAGTCCTGAATTTCTTTCAGGGGGTACTCTACATCCATATCAACTTGAAGGCTTAAACTTTTTACGTTTCTCATGGTCTAAGCAAACTCATGTTATACTCGCCGATGAAATGGGACTTGGAAAAACCATACAGAGTATTGCTTTCTTGGCATCACTTTTTGAAGAGAACATTTCTCCACATTTGGTGGTTGCTCCACTTTCAACATTGCGAAACTGGGAACGTGAATTTGCAACATGGGCGCCACAAATGAATGTTGTTATGTATGTTGGATCTTCTCAAGCCCGTGCTGTTATACGTGAGTATGAATTTTACTTTCCAAAGAGCCAGAAGAAGTTAAAAAAAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTCGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACACAGCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAACTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACTGGGACTCCTCTGCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAATTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCACAAAATGTTGGCGCCCCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCGAACAGAAAGAATATTATAAGGCTATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGAGCTCAGATTTCTCTTATCAATGTTGTTATGGAGTTACGGAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCATACATTCAAGATGCAAAGGAATCTTACACAAAGCTGTTGGAATCATCGGGGAAGTTGCAACTGTTAGACAAAATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCCGAAAGACAAGTACGAATAGATCGGTTTAATGCGAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCGGACACAGTTATTATATATGATAGTGATTGGAACCCTCATGCTGATCTACAAGCTATGGCTAGGGCTCATCGACTCGGACAAACTAATAAGGTAATGATTTATAGGCTTGTAACACGGGGAAGCATTGAAGAAAGAATGATGCAGATGACTAAGAAGAAAATGGTGCTAGAACATCTTGTTGTAGGCAGGCTAAAATCTCAAAATATTAACCAGGAGGAGTTGAATGATATTATAAGGTATGGCTCCAAGGAGTTATTCGCTGATGAGAATGATGAAGCAGGGAAATCACGCCAGATTCATTATGATGATGCTGCCATAGATAGATTGCTGGACCGTGAACAAGTTCGTGATGAAGAGGCTACAATGGATGATGATGAGGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCCGAAGAGGCAGCAAAAAAGAAAGCTATGGAGAATGAGTCTGCTGTGGCTAGTACAGAACGAGCAAAATACTGGGAGGAGTTGTTAGGAGACAGATATGAAGTTCATAAAGTTCAAGAGTTGGATGCCTTGGGCAAAGGGAAGCGGAGTCGTCACAAGCAGATGGTCTCTGTTGAGGATGATGATCTTGCTGGTCTGGAAGATGTGAGCTCTGATGGTGATGACAATGTTGATGCGGAGCTTACTGATGGTGATTCAAACTCAAATGGAACTATTTCTAAAAGACCATATAAAAAGAGAGCCCGTGCAGATAGCACAGAGCCGCATCCTCTGATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGTTTTAATCAGAATCAGAGAGCTGCTTTTGTGCAAATTCTGATGAGGTTTGGGATGGGTGATTATGATTGGAAGGAGTTCACTTCTCGAATGAAACAGAAGACTTGTGAAGAAATCAAAGACTATGGAATCCTTTTCCTAAATCATATTATCGAAGATATAACCGATGCCTCTACATTCTCAGATGGCGTTCCAAAAGAAGGGCTTAGAATTCAAGATGTACTTGTGAGGATTGCAATTCTGGGCTTGATAAGGGAAAGAGTGAGGTTTGCATCAGAAAACCCTGGGACTCAACTTTTTTCAGCTGAAATCTTATTTCGCTATCCCAGTTTGAAGGGTGCAAAGCTTTGGAAGGAGGAGCATGATTTAGTGCTGCTGCGTGCTGTGCTGAAGCACGGATATGGAAGGTGGCAAGCTATTCTTGATGATAAGGACCTGAAGATTCATGAGATCATCTGTCAGGAGTTGAACCTTCCTCTTATGAATTTACCGGTACCGGGACAAGTAGGCTCTCAGGCACAAAATAGTGCAAATTTGTCCAACTCAGGAGCAGTTAGCAATCAATCTCAGGAAAATGATGTGGGTAACAAAGCAGCTGATGGTGCGCTTGGTTCTGGTGATGCTAGGAGCCAAACACTTTTATATCAAGAGTCCTCCATGTTATATCATTTTAGAGACATGCAGAGGAGACAGGTTGAGTTTATAAAAAAGAGGGTGCTTCTCTTGGAAAAAGGAATCAATGCAGAGTACCAGAAAGAATGCTTAGGTGAAGTAAAAGTGAATGAAGTAACAAGCAATGGACTTAATTGTGAAGAACCCAAGGCTACAAGTATGCCCAGTAATAAATCAGGGGAGACAGACACCCAAATGTCTGATCAACTGCCTCAAGTGGAAGCAATAGCTTCAGACAAGATTTCTGTTGCTGATTGTGATCCAAATCGTTTGGAATTGATTCGGCTTTACAATGAGATGTGTAATGTCATGGACGAAAACACCAATGCAAGAAAACGAGCAGAAGTTGACGTGAAGAACTTGCTGGCAATAGAGCCCATTTGTGAAGACATCAATAGAATTCTAACACCCTTACAGCAAAGTCACCCTTCTGAAGAAAAGCCATTATTGATTCCAGAGAATAAATCAGAGGTTTCGCTACAAAATGAAGTTGTGGTTTCTCAAGATGGAAAACCTACATCGGTGGGTGACGAGAGAACAGATCTGGTAGTGGGAGGTCAACTTACTAAAGAAAACAGCACGGGTCTAGTCGAAGAGAAGGAAACACCGAGTCTTTTAGAAACAAGGGGAAGGGATATAGAAATGAATGAAGCTGAGAATGATGCCCAGCTGAATGAAAAGAAAGAAAACAGCACAGGTCCTGTCGAAGAGAAGGAAACACGAAGTCTTTTAGAAACAAGGGGAAGTGATATAGAAATGAATGAAGCTGAGAATGATGCTGAACTGAATGAAAAGAAAGAAAACAGCACAGGTCCTGTCGAAGAGAAGGAAACACCAAGTCTTTTAGAAACAAGGGGAAGTGATATAGAAATGAATGAAGCTGGGAATGATGCTGAACTGAATGAAAAGAAAGAAAACTCTGACCCACCGGTCATCTTGTTGGACGATTGA 4605 0.4104 MDQPCICEKPPLVERVIMLANGAVQTHPIMSSLLERLRARSDRKPIYSIDESDEEADILPGKHEPTQETFERIVRSDTKENCCQACGENGDLLNCETCTYAYHPRCLLPPLRAPVPDNWRCPECVSPLNDIDKILDCEMRPTVADDSDFTKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAYKTHPRLKTKVNNFHRQTSSVNTSDEDFVAIRPEWTTIDRIIACRGDDDKEYLVKWRELSYDECSWESESDISEFQAEIERFDRFQSRSRKFVISNKQKGSVRDGAELMRHQKEFHQCEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKSQKKLKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSEQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPYIQDAKESYTKLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKSQNINQEELNDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVRDEEATMDDDEDGFLKAFKVANFEYIDEVEAAAEEAAKKKAMENESAVASTERAKYWEELLGDRYEVHKVQELDALGKGKRSRHKQMVSVEDDDLAGLEDVSSDGDDNVDAELTDGDSNSNGTISKRPYKKRARADSTEPHPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTCEEIKDYGILFLNHIIEDITDASTFSDGVPKEGLRIQDVLVRIAILGLIRERVRFASENPGTQLFSAEILFRYPSLKGAKLWKEEHDLVLLRAVLKHGYGRWQAILDDKDLKIHEIICQELNLPLMNLPVPGQVGSQAQNSANLSNSGAVSNQSQENDVGNKAADGALGSGDARSQTLLYQESSMLYHFRDMQRRQVEFIKKRVLLLEKGINAEYQKECLGEVKVNEVTSNGLNCEEPKATSMPSNKSGETDTQMSDQLPQVEAIASDKISVADCDPNRLELIRLYNEMCNVMDENTNARKRAEVDVKNLLAIEPICEDINRILTPLQQSHPSEEKPLLIPENKSEVSLQNEVVVSQDGKPTSVGDERTDLVVGGQLTKENSTGLVEEKETPSLLETRGRDIEMNEAENDAQLNEKKENSTGPVEEKETRSLLETRGSDIEMNEAENDAELNEKKENSTGPVEEKETPSLLETRGSDIEMNEAGNDAELNEKKENSDPPVILLDD 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1950 1534 ProSiteProfiles Rubredoxin-like domain profile. 90 134 IPR024934 GO:0005506
Acco10g1950 1534 MobiDBLite consensus disorder prediction 1165 1197 - -
Acco10g1950 1534 SMART DUF1086_2 943 1099 IPR009462 GO:0003677|GO:0006338
Acco10g1950 1534 Pfam PHD-finger 83 125 IPR019787 -
Acco10g1950 1534 CDD CD1_tandem 127 201 - -
Acco10g1950 1534 Gene3D - 307 557 IPR038718 -
Acco10g1950 1534 SMART chromo_7 219 272 IPR000953 -
Acco10g1950 1534 SMART chromo_7 128 191 IPR000953 -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 918 984 - -
Acco10g1950 1534 Gene3D - 129 203 - -
Acco10g1950 1534 SMART ultradead3 311 524 IPR014001 -
Acco10g1950 1534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 128 IPR013083 -
Acco10g1950 1534 ProSiteProfiles Chromo and chromo shadow domain profile. 221 282 IPR000953 -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 969 984 - -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 1508 1534 - -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 1263 1283 - -
Acco10g1950 1534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 327 513 IPR014001 -
Acco10g1950 1534 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 73 1492 - -
Acco10g1950 1534 CDD CD2_tandem 219 267 - -
Acco10g1950 1534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 641 800 IPR001650 -
Acco10g1950 1534 ProSitePatterns Zinc finger PHD-type signature. 83 124 IPR019786 -
Acco10g1950 1534 Pfam Helicase conserved C-terminal domain 638 751 IPR001650 -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 918 932 - -
Acco10g1950 1534 Pfam CHD subfamily II, DUF1087 872 934 IPR009463 -
Acco10g1950 1534 Pfam CHD subfamily II, SANT-like domain 965 1095 IPR009462 GO:0003677|GO:0006338
Acco10g1950 1534 MobiDBLite consensus disorder prediction 1412 1501 - -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 1165 1189 - -
Acco10g1950 1534 Gene3D - 209 269 - -
Acco10g1950 1534 SMART helicmild6 667 751 IPR001650 -
Acco10g1950 1534 Gene3D - 1066 1236 - -
Acco10g1950 1534 SMART DUF1087_2 871 937 IPR009463 -
Acco10g1950 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 548 IPR027417 -
Acco10g1950 1534 SUPERFAMILY Chromo domain-like 95 205 IPR016197 -
Acco10g1950 1534 ProSiteProfiles Zinc finger PHD-type profile. 80 127 IPR019787 -
Acco10g1950 1534 SMART PHD_3 82 125 IPR001965 -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 1407 1534 - -
Acco10g1950 1534 SUPERFAMILY Chromo domain-like 206 269 IPR016197 -
Acco10g1950 1534 MobiDBLite consensus disorder prediction 933 953 - -
Acco10g1950 1534 CDD SF2_C_SNF 636 762 - -
Acco10g1950 1534 Coils Coil 866 886 - -
Acco10g1950 1534 Pfam Chromo (CHRromatin Organisation MOdifier) domain 222 268 IPR023780 -
Acco10g1950 1534 Pfam Chromo (CHRromatin Organisation MOdifier) domain 131 185 IPR023780 -
Acco10g1950 1534 Pfam SNF2-related domain 334 615 IPR000330 GO:0005524|GO:0140658
Acco10g1950 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 808 IPR027417 -
Acco10g1950 1534 Gene3D - 558 782 IPR027417 -
Acco10g1950 1534 ProSiteProfiles Chromo and chromo shadow domain profile. 129 211 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1950 Acco-ChrAcco10 32297459 32312704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1950 337 778 RAD5 or RAD16-like Gene Family AT1G02670 22.605 5.47e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco10g1950 SNF2_N 3.1e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2200 05 38061662 38083001 Acco10g1950 10 32297459 32312704 CCT