Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1947 ATGGCAAAGTGTTACCGGAACAACGTCGGACCCTTGATTCTCGATCGCCACGATCCTACAACGAATGCAGCCGTCGGCGGCCATTTCCGCCTATGGAATGCGCTCTCGGCTTCCTCGTTCCGTCGTATCATTTTTGACGCCATGAGCTGCGGCGGCAGCTCCCGTTATCACCACTCCCACTGTGATGATCTCAGCTCCACCGCCTCAACCACGACATCAACCTCTGGGAACTCGAAGGAGAAGCACCGAGAACAGAAGCAGGAATCATCCAAGTCTAAGCGTAACTCCAATGCGAGGTCCGATAAATTATCGGATCTCTTGCATATAGCAAACTCCGAGAATCGTGCGGAAACTAAGAAGAAGGAAAACGCGTTGGAGGAGCTGAAGCAAATTGTGCAGGAGTTGCAAGGAGAGGATTTGGCGAAGCGACAGGTAGCAGCGTCAAATGTTAGATTGCTAGCCAAGGAAAACTTGGAAGTTAGAGGAAATCTCGCAATGCTTGGAGTCATTCCTCCTCTGGTTGGAATGCTCGACTTGGAAGACACCAACTCTCAAATCGCTTCTCTGTATGCGTTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCAGCCATTGTCAAAGTTGGTGCTGTTCACAAGATGCTAAAGCTCATTGAGTCTCCTACTGCTCTGGATTCATCAGTCTCTGAAGCGATTGTTGCAAATTTCCTTAGCTTGAGTGCTTTAGATTCAAACAAACCAATCATCGGATCCTCTGGAGCAATACCTTTACTGGTTAGAACCCTTAAAAATTTAGACGATTCATGTAGCCTTCAAGCTAAGCAAGATGCTCTGCGAGCACTGTACAATCTTTCAATCTTCCCGACCAATATCTCGTGCATTTTGGAAACCGATTTGGTTCCACATCTAATAAACACAGTAGGAGACATGGAGGTGAGTGAAAGAGTCCTCCCCATATTGAGCAATCTCGCATCTACACCAGAGGGCCGAAAAGCTATTAGTACTGTGCCAGAAGCATTTTCTATTCTGGTTGATGTATTAAACTGGACAGATGCACCAGGGTGCCAAGAGAAAGCTTCTTACATTTTGATGATTATGGCACATAAAGCTTATGGTGACAGGCAGGCCATGATTGAAGCTGGGATTGTATCGTCATTGTTTGAGTTGACACTTCTGGGTACCCCATTGGCACAAAAAAGGGCCTCAAGGATATTACAATGTCTGAGAGTAGTTAAAGGCAAGCAGATTTCTGGGAGTTGCAGTGGGAAGTTCCATGCAAATGTCTCTGCTCCTATGTGTGGCTCTTCATCATCGTCTTGTACAAAGCCACGTGGAGGTGGTAGAAGGTCTTTGGAGGGAGATGAAGATATGATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCTACAGAGTTTGCAGAATAACATGAGGACAATTGTAAAGAGGGCTAACATCCCCCAGGATTTTGTTCCATCTGAACATTTGAAGTCACTCCCTTCAAGTTCGACTTCAAAGAGCCTGCCGTTTTGA 1539 0.462 MAKCYRNNVGPLILDRHDPTTNAAVGGHFRLWNALSASSFRRIIFDAMSCGGSSRYHHSHCDDLSSTASTTTSTSGNSKEKHREQKQESSKSKRNSNARSDKLSDLLHIANSENRAETKKKENALEELKQIVQELQGEDLAKRQVAASNVRLLAKENLEVRGNLAMLGVIPPLVGMLDLEDTNSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPTALDSSVSEAIVANFLSLSALDSNKPIIGSSGAIPLLVRTLKNLDDSCSLQAKQDALRALYNLSIFPTNISCILETDLVPHLINTVGDMEVSERVLPILSNLASTPEGRKAISTVPEAFSILVDVLNWTDAPGCQEKASYILMIMAHKAYGDRQAMIEAGIVSSLFELTLLGTPLAQKRASRILQCLRVVKGKQISGSCSGKFHANVSAPMCGSSSSSCTKPRGGGRRSLEGDEDMMMSEEKKAVKQLVLQSLQNNMRTIVKRANIPQDFVPSEHLKSLPSSSTSKSLPF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1947 512 Coils Coil 107 138 - -
Acco10g1947 512 Gene3D - 96 269 IPR011989 -
Acco10g1947 512 SMART arm_5 288 326 IPR000225 GO:0005515
Acco10g1947 512 SMART arm_5 157 197 IPR000225 GO:0005515
Acco10g1947 512 SMART arm_5 199 242 IPR000225 GO:0005515
Acco10g1947 512 SMART arm_5 243 287 IPR000225 GO:0005515
Acco10g1947 512 MobiDBLite consensus disorder prediction 436 459 - -
Acco10g1947 512 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 254 286 IPR000225 GO:0005515
Acco10g1947 512 SUPERFAMILY ARM repeat 127 409 IPR016024 -
Acco10g1947 512 MobiDBLite consensus disorder prediction 56 121 - -
Acco10g1947 512 Gene3D - 270 419 IPR011989 -
Acco10g1947 512 MobiDBLite consensus disorder prediction 77 121 - -
Acco10g1947 512 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 25 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1947 Acco-ChrAcco10 32256660 32258477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1947 117 410 U-box Gene Family AT2G23140 33.446 3.51e-31 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2198 05 38042968 38044977 Acco10g1947 10 32256660 32258477 CCT