Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1903 ATGATTCATAAGAAGCTTACATGGAGATCTATCATCTTAATGTTCAGTTGTTACAAGACTAAATGCCCATTGAAGGAAGCCAAAAAGAAGAAGATCTCAGAGCAAGGTTCTTTTCAGAGACTAAGCCTCTCAGATATCAGCGTTCCTAGCTCTGGTCAGGCCATTGATGATCTTTCCATCTCCCTTGTTGGCCAAAAGCTTTATCCATTTACACTTGAAGAGCTAAGAGAAGCAACACATGATTTCTCTTGGAGTAATATGATAGGTGAAGGTGGTTTTGGACCTGTGTACAAGGGATTTGTTGATGACAAGATTAAACCGGGTATGAAAGCTCAATCTGTGGCTGTGAAAAGACTAAACTTGGATGGTATGCAAGGTCATAGGGAATGGCTGGCAGAGATAATCTTCCTAGGACAGCTAAAACATCCAAATCTTGTTAACTTGCTTGGGTACTGTTATGAGGAGGAACACCGGCTTTTAGTGTATGAATATATCCCAAGAGGAAGCTTGGAGAGCCAACTTTTCAGAATATACACTGCAGCCTTGCCATGGTCAACCAGGATAAAAATTGCATTGGGAGCAGCCAAGGGTCTAGCCTTCCTTCATGAAGCAGACAAACCTGTAATATGTAGAGATTTCAAAACTTCAAATATCTTATTAGACTCGGACTATACAGCTAAATTGTCAGACTTTGGATTCGCAAAAAATGGACCTGAAGGAGAAGACACACATGTAACAACAAGAATAATAGGAACACAGGGCTATGCAGCACCTGAGTACATAATGACAGGTCACCTAACAACGAAGAGCGATGTGTATAGCTATGGAGTGGTGCTATTACAACTGATAACAGGAAGAAGGATAATGGATAAGAACAGGCCAAGTAGAGAGCAGGGCCTAGTGGAATGGGCAAGGCCTTTATTGAGAGATCAGAGAAAGCTTCATCAGTTCATAGATCCTAGACTTGAAGGACGATTTCCTATCAAAGGAGCTCATAAAGTTGCTGCCTTGGCTTACAAGTGCTTGAGCCACCACCCACAGCCTAGGCCCACTATGAGCGATGTGATCAACATTTTGGAGCCACTTCAGCACTTTGATGATGCATTCACTGAACCTTTTGTGTATGTGGCCACCAATCAAGATGGCAGAATCAACTAA 1158 0.4214 MIHKKLTWRSIILMFSCYKTKCPLKEAKKKKISEQGSFQRLSLSDISVPSSGQAIDDLSISLVGQKLYPFTLEELREATHDFSWSNMIGEGGFGPVYKGFVDDKIKPGMKAQSVAVKRLNLDGMQGHREWLAEIIFLGQLKHPNLVNLLGYCYEEEHRLLVYEYIPRGSLESQLFRIYTAALPWSTRIKIALGAAKGLAFLHEADKPVICRDFKTSNILLDSDYTAKLSDFGFAKNGPEGEDTHVTTRIIGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLQLITGRRIMDKNRPSREQGLVEWARPLLRDQRKLHQFIDPRLEGRFPIKGAHKVAALAYKCLSHHPQPRPTMSDVINILEPLQHFDDAFTEPFVYVATNQDGRIN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1903 385 CDD STKc_IRAK 88 362 - -
Acco10g1903 385 Gene3D Transferase(Phosphotransferase) domain 1 165 372 - -
Acco10g1903 385 PANTHER OS01G0588500 PROTEIN-RELATED 42 363 - -
Acco10g1903 385 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
Acco10g1903 385 FunFam Serine/threonine-protein kinase PBS1 165 372 - -
Acco10g1903 385 Gene3D Phosphorylase Kinase; domain 1 45 164 - -
Acco10g1903 385 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Acco10g1903 385 ProSiteProfiles Protein kinase domain profile. 82 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g1903 385 SUPERFAMILY Protein kinase-like (PK-like) 59 362 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1903 Acco-ChrAcco10 31893350 31894813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1903 70 359 Glycoside Hydrolase AT3G07070 52.560 9.19e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Acco10g1903 PK_Tyr_Ser-Thr 5.3e-45 CL0016