Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1860 ATGAAATTTGAGTCTTCTGGTTTAAATTTACTGTCTCAAGTAGATACTGTGTCTATTGATCATAAAAAGACCTCGTCGATTTACCCTTGCGGACTTTTTCAGTGCATCTTCTCTTCGACGTTGCCTTCCTCAACTCCTCCTGCATCGAAGATCCGAGGAGTTTGGGAAACCCTAAACCCACAACCTACTCACTTTCTCAGTTCCTACTCTCATCTGTCAAAGTTTGCAATCATGGCTGGAGTGGCACCGGAGGGATCACAATATGATACTCGTCAATATGATGCCAAGATGAATGAGTTGCTTGGATCTGATGGTCAAGACTTCTTTACTAGTTATGATGAAGTTTATGATAGCTTTGATGCTATGGGATTGCAGGAGAACCTCCTTAGGGGTATTTATGCATATGGTTTTGAGAAGCCTTCTGCGATCCAGCAAAGGGGAATTGTACCTTTCTGCAAGGGTCTTGATGTAATTCAGCAAGCCCAATCTGGGACTGGAAAAACTGCGACTTTTTGCTCTGGAATATTGCAGCAGCTTGATTACAGCTTAGTTGAATGCCAGGCCCTGGTACTTGCCCCCACTCGTGAGCTTGCTCAACAAATTGAGAAGGTCATGCGAGCACTAGGCGATTATCTTGGAGTTAAGGTTCATGCTTGCGTGGGTGGGACCAGTGTTCGTGAAGATCAACGCATCCTCTCAAGTGGAGTCCATGTCGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTGCGGAGACAATCTCTGCACCCTGATAATATTAAAATGTTTGTGTTGGATGAGGCAGATGAGATGCTTTCTCGAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCAAAAATTCAGGTTGGTGTTTTCTCTGCCACTATGCCGCCTGAGGCCTTGGAGATCACAAGGAAGTTCATGAACAAACCAGTGAGAATTCTGGTAAAACGTGATGAGCTTACCCTTGAGGGTATCAAGCAATTTCATGTCAATGTTGATAAGGAGGAATGGAAGCTTGAGACTCTTTGTGATCTTTACGAGACATTGGCAATCACCCAAAGTGTTATCTTTGTGAACACTAGGCGCAAGGTAGACTGGCTGACAGACAAGATGCGAAGCCGAGATCACACAGTTTCAGCCACCCATGGAGATATGGACCAGAACACTAGGGATATCATTATGCGTGAATTCCGTTCTGGTTCCTCCCGTGTGTTGATCACCACAGACCTGTTGGCCCGTGGTATTGATGTCCAACAAGTCTCACTTGTGATTAATTATGACCTGCCTACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGGTTTGGAAGAAAAGGTGTTGCAATCAATTTTGTTACAAGGGACGACGAAAGGATGCTGTTTGACATCCAGAGGTTTTACAACGTGGTGATTGAGGAGCTCCCAGCCAATGTTGCTGATCTTCTTTGA 1473 0.4494 MKFESSGLNLLSQVDTVSIDHKKTSSIYPCGLFQCIFSSTLPSSTPPASKIRGVWETLNPQPTHFLSSYSHLSKFAIMAGVAPEGSQYDTRQYDAKMNELLGSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLHPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1860 490 Pfam Helicase conserved C-terminal domain 343 451 IPR001650 -
Acco10g1860 490 SMART helicmild6 370 451 IPR001650 -
Acco10g1860 490 Pfam DEAD/DEAH box helicase 142 303 IPR011545 GO:0003676|GO:0005524
Acco10g1860 490 FunFam Eukaryotic initiation factor 4A-II 105 324 - -
Acco10g1860 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 471 IPR027417 -
Acco10g1860 490 SMART ultradead3 136 333 IPR014001 -
Acco10g1860 490 CDD SF2_C_DEAD 330 460 - -
Acco10g1860 490 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 264 272 IPR000629 -
Acco10g1860 490 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 318 IPR014001 -
Acco10g1860 490 Gene3D - 107 325 IPR027417 -
Acco10g1860 490 FunFam Eukaryotic initiation factor 4A-III 325 490 - -
Acco10g1860 490 PANTHER RNA HELICASE 97 474 - -
Acco10g1860 490 CDD DEADc_EIF4A 121 319 - -
Acco10g1860 490 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 117 145 IPR014014 GO:0003724
Acco10g1860 490 Gene3D - 326 490 IPR027417 -
Acco10g1860 490 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 490 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1860 Acco-ChrAcco10 31512954 31517273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1860 78 490 Eukaryotic Initiation Factors Gene Family AT1G72730 89.614 0.0 774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1860 10 31512954 31517273 Acco10g1860 10 31512954 31517273 ECH