Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1854 ATGGAGGGAGTGACAGTGAAGGTGGAAGAAACGGTGGCATGTGGAGCTGGTTCTTCATCTTCGCCTTCATCTTCGGCTTCAAGTCTCTCTCCTCGCCCTATGGAAGGGCTTCACGAGATGGGGCCTCCTCCATTTCTTATCAAAACTTTTGAAATGGTGGAAGACCCATCCACCGACCCTGTTGTTTCTTGGAGCCTTGCTCGTAACAGCTTCATTGTTTGGGACTCCCACAAGTTCTCCACTACCATTCTTCCTCGCTACTTCAAGCACAGTAATTTTTCCAGCTTCATTCGCCAGCTCAACACCTATGGTTTTAGAAAAGTTGATCCCGATCGATGGGAATTTGCAAACGAAGGGTTTTTGGGTGGACAGAGGCATTTGTTGAAGACAATTAAGAGAAGAAGAAATGTGTCGCAGAGTGTACAGCAAGAACGAGGGATTTCCTGTGTTGAACTGGGACAATACGGATTGGAAGGCGAGCTTGACAGGTTGAGAAGAGACAGGTCGGTGATCATGGCCGAAATTGTGAAATTGAGACAGCATCAGCAGAACTCACGGGCGCAACTGATAGCGATGGAGGACAGGTTACAAACCACAGAGAAGAAACAGCAACAGATACTCACTTTCCTTGCCAAAGCACTGAAAAACCCAACTTTTATCCAACAATTCGCGCAGAGAAATGCCCAAAGCAATGAATTACTTGGTGTTGATATCGGGAGAAAGAGGAGACTAACTGCTAGCCCAAGTGTGGAGAATTTACAGGATGATCCTGTGACAGTGGCAGTGCTTAGTGAACCAGTTGTGGACTATTCAACAAATGAACAAGAAGAATTGGCAACCATAGAATCGGAGATAGAGACTTTTTTCTTAGCTCCTCATGATAACGAATCGAGCAGTGACAAGAAAGAACCAGCATCAAGTTCAATTCCTACAACTAGTGGGAGTAATCTGGGTTTACAGAGTGATGCAATATGGGAGGATTTGCTGAATGAAGACTTAGTTCATGGCAATCCAGAGGAGGAAATTATAATTGGTGATCAGTCCGAAACTGATGCTCCAGTTGAAGACTTGGTAGCAAAGTCTTATGAGTGGGTTTCAGGTTTGGAGGACTTGGTAGATCAATTGGGTTATCTTGCTTTGGCCTCTGCAACTCCATTGTCCATTTGCCTGCCTCACTATTGCAGGGGAAGGTGGTCGTTGCTGTAG 1206 0.4552 MEGVTVKVEETVACGAGSSSSPSSSASSLSPRPMEGLHEMGPPPFLIKTFEMVEDPSTDPVVSWSLARNSFIVWDSHKFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQRHLLKTIKRRRNVSQSVQQERGISCVELGQYGLEGELDRLRRDRSVIMAEIVKLRQHQQNSRAQLIAMEDRLQTTEKKQQQILTFLAKALKNPTFIQQFAQRNAQSNELLGVDIGRKRRLTASPSVENLQDDPVTVAVLSEPVVDYSTNEQEELATIESEIETFFLAPHDNESSSDKKEPASSSIPTTSGSNLGLQSDAIWEDLLNEDLVHGNPEEEIIIGDQSETDAPVEDLVAKSYEWVSGLEDLVDQLGYLALASATPLSICLPHYCRGRWSLL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1854 401 FunFam Heat shock transcription factor 1 38 135 - -
Acco10g1854 401 MobiDBLite consensus disorder prediction 14 31 - -
Acco10g1854 401 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1854 401 Coils Coil 182 202 - -
Acco10g1854 401 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1854 401 MobiDBLite consensus disorder prediction 294 318 - -
Acco10g1854 401 MobiDBLite consensus disorder prediction 11 35 - -
Acco10g1854 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 290 IPR027725 -
Acco10g1854 401 Gene3D - 38 135 IPR036388 -
Acco10g1854 401 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1854 401 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1854 401 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1854 401 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1854 401 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Acco10g1854 401 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1854 Acco-ChrAcco10 31493924 31495663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1854 31 379 HSF AT2G26150 53.409 3.08e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco10g1854 HSF_DNA-bind 6.6e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1854 10 31493924 31495663 Acco10g1854 10 31493924 31495663 ECH